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GlyTouCan
Glycan Structure Repository
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Glycoconjugate Repository
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Glycomics MS raw data Repository
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Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
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G39213VZ
Summary
- GlyTouCan ID
-
G39213VZ
- IUPAC Condensed
- GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-
- Motifs
- N-Glycan complex
- Subsumption Level
- Fully-defined saccharide
- Monoisotopic Mass
- 1316.49
External Links
- GlyConnect structure
- GlyGen
- ChEBI
- PubChem Compound
- PubChem Substance
- CarbBank
3D Structures
G84678BK
G13577LP
Organisms
| Organisms | Evidence |
|---|---|
| Mus musculus (house mouse) | |
| Bos taurus (domestic cattle) | |
| Gallus gallus (chicken) | |
| Rattus norvegicus (Norway rat) | |
| Homo sapiens (human) |
Taxonomic Hierarchy
- Viruses
root
cellular organisms [inference]
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| FUT11 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| FUT10 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| MGAT4A | UDP-GlcNAc |
G39213VZ
|
PA |
G29011JC
|
PA | |
| MGAT3 | UDP-GlcNAc |
G39213VZ
|
Asn-X |
G59471TH
|
Asn-X | |
| MGAT4B | UDP-GlcNAc |
G39213VZ
|
PA |
G29011JC
|
PA |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| FUT11 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| FUT8 | GDP-Fuc |
G39213VZ
|
Free |
G80858MF
|
Free | |
| FUT10 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| MGAT4A | UDP-GlcNAc |
G39213VZ
|
PA |
G29011JC
|
PA | |
| MGAT5 | UDP-GlcNAc |
G39213VZ
|
[beta]1-Asn |
G10219AA
|
[beta]1-Asn |
KEGG BRITE Database
G88380UG
G61751GZ
G93351GM
GALAXY
G15403HX
G06063MN
G30817UY
G69912LP
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| O75015 | Low affinity immunoglobulin gamma Fc region receptor III-B | ||
| P01012 | Ovalbumin | ||
| P01579 | Interferon gamma | ||
| P01857 | Immunoglobulin heavy constant gamma 1 | ||
| P01859 | Immunoglobulin heavy constant gamma 2 | ||
| P01860 | Immunoglobulin heavy constant gamma 3 | ||
| P01861 | Immunoglobulin heavy constant gamma 4 | ||
| P01876 | Immunoglobulin heavy constant alpha 1 | ||
| P01877 | Immunoglobulin heavy constant alpha 2 | ||
| P02710 | Acetylcholine receptor subunit alpha |
Sequence Descriptors
- GlycoCT
-
RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:a-dman-HEX-1:5 10b:b-dglc-HEX-1:5 11s:n-acetyl LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:5o(6+1)9d 9:9o(2+1)10d 10:10d(2+1)11n
- WURCS
- WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1
Literature
| PubMed ID | Title | First Author | Publication Date | Source |
|---|---|---|---|---|
| 24680513 | Comparison of separation techniques for the elucidation of IgG N-glycans pooled from healthy mammalian species | Adamczyk B | 2014 May 07 |
|
| 21609021 | Mass Spectrometric Determination of IgG Subclass-Specific Glycosylation Profiles in Siblings Discordant for Myositis Syndromes | Perdivara I | 2011 Jul 1 |
|
| 20131323 | Identification of N-glycans from Ebola virus glycoproteins by matrix-assisted laser desorption/ionisation time-of-flight and negative ion electrospray tandem mass spectrometry | Ritchie G | 2010 Feb 03 |
|
| 19846580 | Comparison of the substrate specificities and catalytic properties of the sister N-acetylglucosaminyltransferases, GnT-V and GnT-Vb (IX) | Alvarez-Manilla G | 2009 Oct 20 |
|
| 19088067 | Activity, splice variants, conserved peptide motifs, and phylogeny of two new alpha1,3-fucosyltransferase families (FUT10 and FUT11) | Mollicone R | 2009 Feb 13 |
|
| 18687680 | High Affinity Interaction between a Bivalve C-type Lectin and a Biantennary Complex-type N-Glycan Revealed by Crystallography and Microcalorimetry | Gourdine J | 2008 Oct 31 |
|
| 17006639 | Kinetic properties and substrate specificities of two recombinant human N-acetylglucosaminyltransferase-IV isozymes | Oguri S | 2006 Nov |
|
| 12941944 | Molecular cloning and characterization of human GnT-IX, a novel beta1,6-N-acetylglucosaminyltransferase that is specifically expressed in the brain | Inamori K | 2003 Oct 31 |
|
| 12652077 | Structural studies on IgG oligosaccharides of patients with primary Sjogren's syndrome | Kuroda Y | 2002 Jan |
|
| 11676606 | Determination of Carbohydrate Structures N-Linked to Soluble CD154 and Characterization of the Interactions of CD40 with CD154 Expressed in Pichia pastoris and Chinese Hamster Ovary Cells | Khandekar SS | 2001 Nov |
|
