GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B3GALT1	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B4GALNT4	UDP-GalNAc	G49108TO	R	G00057MO	R	15044014
B4GALNT3	UDP-GalNAc	G49108TO	R	G00057MO	R	12966086
B3GALNT2	UDP-GalNAc	G49108TO	R	G36387CV	R	14724282
B4GALT1	UDP-Glc	G49108TO	R	G38884XS	R	11485999

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

Displaying entries **1 - 5** of 24 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GAL1	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GAL2	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GALNAC2	CMP-Neu5Ac	G49108TO	benzyl	11062056
CHST7	PAPS	G49108TO	-O-CH3	10781596
CHST3	PAPS	G49108TO	-O-CH3	10781596

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

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UniProt ID	Protein Name	Reference	Source
O14827	Ras-specific guanine nucleotide-releasing factor 2	34105348 35254053	GlyGen The O-GlcNAc Database
O14828	Secretory carrier-associated membrane protein 3	28580691 33214551 34725712 38665916 39302247	The O-GlcNAc Database
O14841	5-oxoprolinase	30397120 30620550	GlyGen The O-GlcNAc Database
O14879	Interferon-induced protein with tetratricopeptide repeats 3	29351928 30379171	The O-GlcNAc Database
O14907	Tax1-binding protein 3	35254053	GlyGen The O-GlcNAc Database
O14920	Inhibitor of nuclear factor kappa-B kinase subunit beta	19202066 30379171 32114385 34681736	GlyGen The O-GlcNAc Database GlyConnect
O14925	Mitochondrial import inner membrane translocase subunit Tim23	30379171	GlyGen The O-GlcNAc Database
O14936	Peripheral plasma membrane protein CASK	29237092	The O-GlcNAc Database
O14964	Hepatocyte growth factor-regulated tyrosine kinase substrate	22661428 28510447 29351928 29485866 30379171 30620550 32119511 33214551 34019948 34725712 35008409 35132862 35138101 35254053 37340703 38665916 39531497	GlyGen The O-GlcNAc Database
O14974	Protein phosphatase 1 regulatory subunit 12A	18840611 20305658 21740066 22661428 22967762 23301498 25367160 27114449 27655845 28411811 28657654 29237092 29351928 30059200 30379171 30620550 31373491 31492838 31637018 32119511 32295844 32574038 33214551 34019870 34019948 34725712 35132862 35138101 35254053 35289036 36240223 37217939 38665916 39302247 39531497 39534244	GlyGen The O-GlcNAc Database

GlycoEpitope

Epitope ID: EP0004

Pathway

Displaying entries **1 - 10** of **127** in total

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Pathway Name	Organism
Antimicrobial peptides	Sus scrofa
Antimicrobial peptides	Rattus norvegicus
Antimicrobial peptides	Dictyostelium discoideum
Antimicrobial peptides	Bos taurus
Antimicrobial peptides	Canis familiaris
Antimicrobial peptides	Mus musculus
Antimicrobial peptides	Gallus gallus
Antimicrobial peptides	Homo sapiens
Antimicrobial peptides	Drosophila melanogaster
Antimicrobial peptides	Xenopus tropicalis

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

Displaying entries **851 - 860** of **10696** in total

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PubMed ID	Title	First Author	Publication Date	Source
35562392	Shrimp thrombospondin (TSP): presence of O-β1,4 N-acetylglucosamine polymers and its function in TSP chain association in egg extracellular matrix	Magerd S	2022 May 13	PubChem
35544562	A bioactive phlebovirus-like envelope protein in a hookworm endogenous virus	Merchant M	2022 May 13	PubChem
35551457	Molecular insights into biogenesis of glycosylphosphatidylinositol anchor proteins	Xu Y	2022 May 12	PubChem
35549549	Structural insights of a highly potent pan-neutralizing SARS-CoV-2 human monoclonal antibody	Torres JL	2022 May 12	PubChem
35507661	Characterization of a vaccine-elicited human antibody with sequence homology to VRC01-class antibodies that binds the C1C2 gp120 domain	Gray MD	2022 May 06	PubChem
35507649	Structural mapping of antibody landscapes to human betacoronavirus spike proteins	Bangaru S	2022 May 06	PubChem
35513511	Cell-type-specific labeling and profiling of glycans in living mice	Fan X	2022 May 05	GlyGen PubChem
35513753	The interaction of O-GlcNAc-modified NLRX1 and IKK-α modulates IL-1β expression in M1 macrophages	Chen L	2022 May 05	GlyGen PubChem
35219398	Human CEACAM1 N-domain dimerization is independent from glycan modifications	Belcher Dufrisne M	2022 May 05	PubChem
35504898	Dynamic O-GlcNAcylation coordinates ferritinophagy and mitophagy to activate ferroptosis	Yu F	2022 May 03	GlyGen PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements