GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT1	UDP-Gal	G49108TO	R	G00055MO	R	3014508
B4GALT2	UDP-Gal	G49108TO	Benzyl-[beta]	G00055MO	Benzyl-[beta]	9405390
B3GALT2	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B3GALT5	UDP-Gal	G49108TO	R	G00056MO	R	10212226

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
B4GALT2	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	9405390
B4GALT7	UDP-Gal	G49108TO	Benzyl-[beta]	10473568
B4GALT2	UDP-Gal	G49108TO		9405390
B4GALT7	UDP-Gal	G49108TO	4-D-MethylUmb-[beta]	10473568
B3GNT2	UDP-GalNAc	G49108TO	[beta]1-OBn	9892646

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

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UniProt ID	Protein Name	Reference	Source
Q9NR12	PDZ and LIM domain protein 7	20068230 21158410 22661428 29351928 30059200 30379171 31492838 32119511 32574038 32870666 33214551 34019948 34725712 35132862 35138101 35254053 35289036 37340703 38665916 38838015 39302247 39531497 39534244	GlyGen The O-GlcNAc Database
Q9NR30	Nucleolar RNA helicase 2	16408927 21740066 22121020 23301498 25367160 26853435 28510447 29351928 30444036 32119511 32522876 33214551 33465208 34019948 34725712 35083852 37217939 38665916 39395807	GlyGen The O-GlcNAc Database
Q9NR50	Translation initiation factor eIF2B subunit gamma	23301498 28510447 34725712 39531497	The O-GlcNAc Database
Q9NR56	Muscleblind-like protein 1	23301498 28510447 29351928 29485866 33214551 34019948 34725712 35138101 38665916 39531497	The O-GlcNAc Database
Q9NR64	Kelch-like protein 1	30379171	GlyGen The O-GlcNAc Database
Q9NR80	Rho guanine nucleotide exchange factor 4	37217939 38253038	The O-GlcNAc Database
Q9NR82	Potassium voltage-gated channel subfamily KQT member 5	38253038	The O-GlcNAc Database
Q9NR99	Matrix-remodeling-associated protein 5	37217939 38253038	The O-GlcNAc Database
Q9NRA8	Eukaryotic translation initiation factor 4E transporter	31492838 38253038 38665916 39302247 39534244	GlyGen The O-GlcNAc Database
Q9NRB3	Carbohydrate sulfotransferase 12	35132862	GlyGen The O-GlcNAc Database

GlycoEpitope

Epitope ID: EP0004

Pathway

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Pathway Name	Organism
Antimicrobial peptides	Sus scrofa
Antimicrobial peptides	Rattus norvegicus
Antimicrobial peptides	Dictyostelium discoideum
Antimicrobial peptides	Bos taurus
Antimicrobial peptides	Canis familiaris
Antimicrobial peptides	Mus musculus
Antimicrobial peptides	Gallus gallus
Antimicrobial peptides	Homo sapiens
Antimicrobial peptides	Drosophila melanogaster
Antimicrobial peptides	Xenopus tropicalis

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

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PubMed ID	Title	First Author	Publication Date	Source
1259414	Immunochemical studies on blood groups. Structures and immunochemical properties of nine oligosaccharides from B-active and non-B-active blood group substances of horse gastric mucosae	Newman W	1976 Feb	PubChem
5426	Binding of Substrate Analogues to Subsites D, E, and F of Hen Egg-white Lysozyme1	Ikeda K	1976 Feb	PubChem
1245466	Biosynthesis of peptidoglycan in Staphylococcus aureus: incorporation of the Nepsilon-Ala-Lys moiety into the peptide subunit of nascent peptidoglycan	Swenson JC	1976 Feb	PubChem
59831	Immunochemical studies on bacterial blood group substances. VIII. The structure of oligosaccharides from blood group H-active polysaccharide of Escherichia coli 2B-V	Kishi K	1976 Feb	PubChem
1061137	A hepatic receptor of avian origin capable of binding specifically modified glycoproteins.	Lunney J	1976 Feb	PubChem
820896	Effect of Plant Lectins on γ Phage Receptor Sites of Bacillus anthracis	Watanabe T	1976 Feb	PubChem
1270406	Biosynthesis of Sulfated Glycoprotein in the Endometrium of Rabbit Uterus1	Endo M	1976 Feb	PubChem
1002713	Participation of a trisaccharide-lipid in glycosylation of oviduct membrane glycoproteins	Chen WW	1976 Dec 25	PubChem
999860	The last two pathway-specific enzyme activities of hexosamine biosynthesis are present in Blastocladiella emersonii zoospores prior to germination	Selitrennikoff CP	1976 Dec 21	PubChem
1002698	Gangliosides of human kidney.	Rauvala H	1976 Dec 10	PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements