GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT1	UDP-Gal	G49108TO	R	G00055MO	R	3014508
B4GALT2	UDP-Gal	G49108TO	Benzyl-[beta]	G00055MO	Benzyl-[beta]	9405390
B3GALT2	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B3GALT5	UDP-Gal	G49108TO	R	G00056MO	R	10212226

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

Displaying entries **1 - 5** of 24 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GAL1	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GAL2	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GALNAC2	CMP-Neu5Ac	G49108TO	benzyl	11062056
CHST7	PAPS	G49108TO	-O-CH3	10781596
CHST3	PAPS	G49108TO	-O-CH3	10781596

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

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UniProt ID	Protein Name	Reference	Source
P02462	Collagen alpha-1(IV) chain	38253038	The O-GlcNAc Database
P02468	Laminin subunit gamma-1	29187734 30059200 33300544 36288343 36852467	GlyGen The O-GlcNAc Database
P02470	Alpha-crystallin A chain	15340146 1687959 1730617 18617508 18683930 19245863 20146544 22556278 24131013 26644245 29029932 32038294	The O-GlcNAc Database GlyConnect GlyConnect
P02488	Alpha-crystallin A chain	1730617	GlyConnect
P02489	Alpha-crystallin A chain	1730617	GlyGen GlyConnect
P02505	Alpha-crystallin A chain	1687959 1730617	GlyConnect
P02510	Alpha-crystallin B chain	1687959 1730617 19245863 26644245 38665916	The O-GlcNAc Database GlyConnect GlyConnect GlyConnect
P02511	Alpha-crystallin B chain	1730617 23271734 28657654 29385708 30379171 31492838 33723378 35254053 8639509	GlyGen The O-GlcNAc Database
P02545	Prelamin-A/C	20068230 22121020 22661428 22967762 23271734 25367160 26853435 27655845 28510447 28604694 28657654 29237092 29351928 29772801 30059200 30379171 30444036 30620550 31373491 31492838 32119511 32574038 32870666 33214551 33465208 34019948 34065225 34725712 34846842 35083852 35132862 35254053 35289036 36240223 37217939 37340703 38665916 39302247 39531497 39534244	GlyGen The O-GlcNAc Database
P02549	Spectrin alpha chain, erythrocytic 1	18984734 30379171	GlyGen The O-GlcNAc Database GlyConnect

GlycoEpitope

Epitope ID: EP0004

Pathway

Displaying entries **81 - 90** of **127** in total

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Pathway Name	Organism
E.coli O4-H5	Escherichia coli
E.coli O4-K52	Escherichia coli
E.coli O40	Escherichia coli
E.coli O41	Escherichia coli
E.coli O42	Escherichia coli
E.coli O45rel	Escherichia coli
E.coli O48	Escherichia coli
E.coli O53	Escherichia coli
E.coli O55	Escherichia coli
E.coli O56	Escherichia coli

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

Displaying entries **521 - 530** of **10696** in total

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PubMed ID	Title	First Author	Publication Date	Source
37422472	The structural pathology for hypophosphatasia caused by malfunctional tissue non-specific alkaline phosphatase	Yu Y	2023 Jul 08	PubChem
37446392	Identification of Regulatory Molecular “Hot Spots” for LH/PLOD Collagen Glycosyltransferase Activity	Mattoteia D	2023 Jul 07	PubChem
37390815	Glucose-induced CRL4COP1-p53 axis amplifies glycometabolism to drive tumorigenesis	Su Y	2023 Jul 06	GlyGen PubChem
37409796	Efficient Production of N-Acetylneuraminic Acid in Escherichia coli Based on the UDP-N-Acetylglucosamine Biosynthetic Pathway	Zhao M	2023 Jul 06	PubChem
37357620	Crystal structures of Na+,K+‐ATPase reveal the mechanism that converts the K+‐bound form to Na+‐bound form and opens and closes the cytoplasmic gate	Kanai R	2023 Jul 06	PubChem
37407593	Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies	Metcalf MC	2023 Jul 05	PubChem
37400538	Discovery of VH domains that allosterically inhibit ENPP1	Solomon PE	2023 Jul 03	PubChem
37395731	Author response: Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor	De Gieter S	2023 Jul 03	PubChem
37224467	O-linked N-acetylglucosamine modification is essential for physiological adipose expansion induced by high-fat feeding	Nakamoto A	2023 Jul 01	PubChem
37028871	Elucidating the role of N-acetylglucosamine in Group A Carbohydrate for the development of an effective glycoconjugate vaccine against Group A Streptococcus	Pitirollo O	2023 Jul 01	PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements