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Probable NOT transcription complex subunit VIP2

Summary

UniProt ID: Q9FPW4
Gene Symbol: VIP2 At5g59710 MTH12.8
Gene ID: 836092
Organism: Arabidopsis thaliana (thale cress)

External Links

GlyGen: Q9FPW4
Re-Glyco: Q9FPW4

Annotation

Keyword: Crown gall tumor Nucleus Reference proteome Transcription regulation

Gene Ontology (GO)

Displaying entries **1 - 5** of 6 in total

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2

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GO Term	Evidence Code	Reference
nuclear-transcribed mRNA poly(A) tail shortening	IBA	GO_REF
regulation of DNA-templated transcription	IEP	PMID
regulation of transcription, DNA-templated	IEP	PMID
regulation of DNA-templated transcription	IEA	GO_REF
regulation of transcription, DNA-templated	IEA	GO_REF

GO Hierarchy

biological process

cellular process [inference]

metabolic process [inference]

catabolic process [inference]

macromolecule catabolic process [inference]

nucleic acid catabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

nucleobase-containing compound catabolic process [inference]

nucleic acid catabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

macromolecule metabolic process [inference]

macromolecule catabolic process [inference]

nucleic acid catabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA integration

RNA metabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

mRNA metabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

nucleic acid catabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

primary metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound catabolic process [inference]

nucleic acid catabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

nucleic acid metabolic process [inference]

DNA metabolic process [inference]

DNA integration

RNA metabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

mRNA metabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

nucleic acid catabolic process [inference]

RNA catabolic process [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

biological regulation [inference]

regulation of biological process [inference]

negative regulation of biological process [inference]

negative regulation of cellular process [inference]

negative regulation of metabolic process [inference]

negative regulation of biosynthetic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

negative regulation of macromolecule metabolic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

regulation of cellular process [inference]

regulation of metabolic process [inference]

regulation of biosynthetic process [inference]

negative regulation of biosynthetic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

regulation of transcription, DNA-templated

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

regulation of RNA biosynthetic process [inference]

regulation of transcription, DNA-templated

negative regulation of metabolic process [inference]

negative regulation of biosynthetic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

negative regulation of macromolecule metabolic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

regulation of macromolecule metabolic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

regulation of transcription, DNA-templated

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

regulation of RNA biosynthetic process [inference]

regulation of transcription, DNA-templated

negative regulation of macromolecule metabolic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

regulation of RNA metabolic process [inference]

regulation of RNA biosynthetic process [inference]

regulation of transcription, DNA-templated

regulation of primary metabolic process [inference]

regulation of nucleobase-containing compound metabolic process [inference]

regulation of RNA metabolic process [inference]

regulation of RNA biosynthetic process [inference]

regulation of transcription, DNA-templated

negative regulation of cellular process [inference]

negative regulation of metabolic process [inference]

negative regulation of biosynthetic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

negative regulation of macromolecule metabolic process [inference]

negative regulation of macromolecule biosynthetic process [inference]

negative regulation of gene expression [inference]

mRNA catabolic process [inference]

nuclear-transcribed mRNA catabolic process [inference]

nuclear-transcribed mRNA poly(A) tail shortening

Displaying **all 5** entries
GO Term	Evidence Code	Reference
P-body	IBA	GO_REF
nucleus	IDA	PMID
nucleus	IEA	GO_REF
CCR4-NOT core complex	IBA	GO_REF
CCR4-NOT core complex	IEA	GO_REF

GO Hierarchy

cellular component

protein-containing complex [inference]

intracellular protein-containing complex [inference]

CCR4-NOT core complex

cellular anatomical structure [inference]

organelle [inference]

membrane-bounded organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

membraneless organelle [inference]

intracellular membraneless organelle [inference]

ribonucleoprotein granule [inference]

cytoplasmic ribonucleoprotein granule [inference]

P-body

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

intracellular membraneless organelle [inference]

ribonucleoprotein granule [inference]

cytoplasmic ribonucleoprotein granule [inference]

P-body

supramolecular complex [inference]

ribonucleoprotein granule [inference]

cytoplasmic ribonucleoprotein granule [inference]

P-body

Displaying 1 entry
GO Term	Evidence Code	Reference
mRNA binding	HDA	PMID

GO Hierarchy

molecular function

binding [inference]

nucleic acid binding [inference]

RNA binding [inference]

mRNA binding

Gene Ontology information from UniProt.

Annotation information from UniProt.

Sequence

MSNLHSSLNGSASNLPDGSGRSFTASYSGQSGAPSPSFHHTGNLQGLHNIHGNYNVGNMQGTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGGGNLGRNISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRMMGGVLPQGSQVMSMLGNSYHTGGGPLSQNHVQSVNNMMLSDHPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSLRKQGLGVPLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNFSMGRSGGFNLGATYSSHRPQQQPQHTSSTGGLQGLGLRPLSSPNAVSSIGYDQLIQQYQQHQNQSQFPVQQMSSINQFRDSEMKSTQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSLLQL

N : N-glycosylation Site
___ : Potential Sequon

Glycosylation Sites