GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT1	UDP-Gal	G49108TO	R	G00055MO	R	3014508
B4GALT2	UDP-Gal	G49108TO	Benzyl-[beta]	G00055MO	Benzyl-[beta]	9405390
B3GALT2	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B3GALT5	UDP-Gal	G49108TO	R	G00056MO	R	10212226

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
B3GALNT2	UDP-GalNAc	G49108TO	[alpha]-Bz	14724282
B3GLCT	UDP-Glc	G49108TO	[beta]-benzyl	16899492
B3GNT2	UDP-GlcNAc	G49108TO	[beta]1-OBn	9892646
MGAT5	UDP-GlcNAc	G49108TO		19846580
B3GNT8	UDP-GlcNAc	G49108TO	[alpha]-Bz	15620693

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

Displaying entries **6821 - 6830** of **7284** in total

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UniProt ID	Protein Name	Reference	Source
Q9SQV1	DEAD-box ATP-dependent RNA helicase 40		GlyGen
Q9SS47	Pumilio homolog 4		GlyGen
Q9STM4	Zinc finger CCCH domain-containing protein 43		GlyGen
Q9STN3	Putative transcription elongation factor SPT5 homolog 1		GlyGen
Q9SV09	Zinc finger CCCH domain-containing protein 46		GlyGen
Q9SW80	BEL1-like homeodomain protein 2		GlyGen
Q9SZH4	RNA-binding KH domain-containing protein PEPPER		GlyGen
Q9T0C6	Putative F-box protein At4g11580		GlyGen
Q9TYY0	Geranylgeranyl transferase type-2 subunit alpha	31682414	The O-GlcNAc Database
Q9U325	MEF2 transcription factor homolog	31682414	The O-GlcNAc Database

GlycoEpitope

Epitope ID: EP0004

Pathway

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Pathway Name	Organism
Antimicrobial peptides	Sus scrofa
Antimicrobial peptides	Rattus norvegicus
Antimicrobial peptides	Dictyostelium discoideum
Antimicrobial peptides	Bos taurus
Antimicrobial peptides	Canis familiaris
Antimicrobial peptides	Mus musculus
Antimicrobial peptides	Gallus gallus
Antimicrobial peptides	Homo sapiens
Antimicrobial peptides	Drosophila melanogaster
Antimicrobial peptides	Xenopus tropicalis

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

Displaying entries **711 - 720** of **10696** in total

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PubMed ID	Title	First Author	Publication Date	Source
36124412	Hexosamine pathway activation improves memory but does not extend lifespan in mice	Allmeroth K	2022 Sep 19	PubChem
36115831	Structural mechanism of tapasin-mediated MHC-I peptide loading in antigen presentation	Jiang J	2022 Sep 17	PubChem
35971553	Engineering SARS-CoV-2 neutralizing antibodies for increased potency and reduced viral escape pathways	Zhao F	2022 Sep 16	PubChem
36103542	Design of the SARS-CoV-2 RBD vaccine antigen improves neutralizing antibody response	Dickey TH	2022 Sep 16	PubChem
36109732	A potent synthetic nanobody with broad-spectrum activity neutralizes SARS-CoV-2 virus and the Omicron variant BA.1 through a unique binding mode	Zhao D	2022 Sep 15	PubChem
36106687	Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family	Oka N	2022 Sep 15	PubChem
36104594	The value of injectable viscoelastic supplements for joints	Bowden DJ	2022 Sep 14	PubChem
36104770	O-GlcNAcylation: an important post-translational modification and a potential therapeutic target for cancer therapy	Lu Q	2022 Sep 14	PubChem
35952670	Allelic polymorphism controls autoreactivity and vaccine elicitation of human broadly neutralizing antibodies against influenza virus	Sangesland M	2022 Sep 13	PubChem
35977542	Vaccination with a structure-based stabilized version of malarial antigen Pfs48/45 elicits ultra-potent transmission-blocking antibody responses	McLeod B	2022 Sep 13	PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements