GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT1	UDP-Gal	G49108TO	R	G00055MO	R	3014508
B4GALT2	UDP-Gal	G49108TO	Benzyl-[beta]	G00055MO	Benzyl-[beta]	9405390
B3GALT2	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B3GALT5	UDP-Gal	G49108TO	R	G00056MO	R	10212226

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GAL1	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GAL2	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GALNAC2	CMP-Neu5Ac	G49108TO	benzyl	11062056
CHST7	PAPS	G49108TO	-O-CH3	10781596
CHST3	PAPS	G49108TO	-O-CH3	10781596

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

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UniProt ID	Protein Name	Reference	Source
Q9Y566	SH3 and multiple ankyrin repeat domains protein 1	28657654	GlyGen The O-GlcNAc Database
Q9Y572	Receptor-interacting serine/threonine-protein kinase 3	30770249	GlyGen The O-GlcNAc Database
Q9Y580	RNA-binding protein 7	31492838 34019948 34105348 38665916 39531497	GlyGen The O-GlcNAc Database
Q9Y597	BTB/POZ domain-containing protein KCTD3	35705054	GlyGen
Q9Y5A9	YTH domain-containing family protein 2	28510447 29351928 29485866 33214551 34019948 34229054 34725712 35132862 35138101 35254053 36765030 38253038 38665916 39425013 39531497 39534244	GlyGen The O-GlcNAc Database
Q9Y5B6	PAX3- and PAX7-binding protein 1	30379171 34019948	GlyGen The O-GlcNAc Database
Q9Y5B9	FACT complex subunit SPT16	23301498 28510447 29351928 30379171 32119511 32522876 33214551 33465208 34019948 34725712 35138101 37217939 38665916	GlyGen The O-GlcNAc Database
Q9Y5C1	Angiopoietin-related protein 3	29351928	The O-GlcNAc Database
Q9Y5E2	Protocadherin beta-7	38253038	The O-GlcNAc Database
Q9Y5E5	Protocadherin beta-4	30620550	The O-GlcNAc Database

GlycoEpitope

Epitope ID: EP0004

Pathway

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Pathway Name	Organism
E.coli O96	Escherichia coli
E.coli O98	Escherichia coli
Events associated with phagocytolytic activity of PMN cells	Homo sapiens
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Rattus norvegicus
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Bos taurus
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Xenopus tropicalis
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Homo sapiens
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Gallus gallus
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Mus musculus
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Canis familiaris

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

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PubMed ID	Title	First Author	Publication Date	Source
7408896	Sulfated Trihexosylceramide from Gastric Mucosa Containing N-Acetylglucosamine	Slomiany A	1980 Aug	PubChem
6769707	Immunological evidence for structural similarity among lectins from species of the solanaceae	Kilpatrick DC	1980 Apr 21	PubChem
6244296	Dissociation and reconstitution of membranes synthesizing the peptidoglycan of Escherichia coli. Lipid dependence of the synthetic enzymes.	Taku A	1980 Apr 10	PubChem
6252281	Amino-sugar Transport Systems of Escherichia coli K12	Jones-Mortimer MC	1980 Apr 01	PubChem
6988076	Artificial carbohydrate antigens: the synthesis of a tetrasaccharide hapten, a Shigella flexneri O-antigen repeating unit	Bundle DR	1980 Apr 01	PubChem
7363276	Synthesis and biological activity of some 1-N-substituted 2-acetamido-2-deoxy-beta-D-glycopyranosylamine derivatives and related analogs	Paul B	1980 Apr 01	PubChem
7371958	The effects of tunicamycin on protein glycosylation in mammalian and fungal systems	Speake BK	1980 Apr 01	PubChem
7378878	Studies on the in vivo uptake and incorporation of 1-14C-labeled <scp>D</scp>-hexosamines in tissues, mucopolysaccharide–peptide complexes, and glycosaminoglycans of the domestic fowl	Kwai Hang KFN	1980 Apr 01	PubChem
6447600	Macromolecular and Histological Studies of New Tissue Formation in Velour Vascular Prostheses	Chignier E	1980	PubChem
6244860	[Mitochondrial N-acetylglucosaminyl transferase connected with viral infection]	Gateau O	1980	PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements