GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT1	UDP-Gal	G49108TO	R	G00055MO	R	3014508
B4GALT2	UDP-Gal	G49108TO	Benzyl-[beta]	G00055MO	Benzyl-[beta]	9405390
B3GALT2	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B3GALT5	UDP-Gal	G49108TO	R	G00056MO	R	10212226

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

Displaying entries **1 - 5** of 24 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GAL1	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GAL2	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GALNAC2	CMP-Neu5Ac	G49108TO	benzyl	11062056
CHST7	PAPS	G49108TO	-O-CH3	10781596
CHST3	PAPS	G49108TO	-O-CH3	10781596

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

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UniProt ID	Protein Name	Reference	Source
Q9H269	Vacuolar protein sorting-associated protein 16 homolog	29351928 38665916	GlyGen The O-GlcNAc Database
Q9H270	Vacuolar protein sorting-associated protein 11 homolog	30379171 37217939 38253038	GlyGen The O-GlcNAc Database
Q9H2C0	Gigaxonin	28510447 31944090	GlyGen The O-GlcNAc Database
Q9H2D6	TRIO and F-actin-binding protein	30379171 34846842 37217939	GlyGen The O-GlcNAc Database
Q9H2F5	Enhancer of polycomb homolog 1	28657654 29351928 30059200 30379171 35254053 35289036 37340703 38665916 39531497	GlyGen The O-GlcNAc Database
Q9H2G2	STE20-like serine/threonine-protein kinase	16408927 26853435 32119511 32513743 34229054 35008409 37217939 38253038 38665916	The O-GlcNAc Database
Q9H2P0	Activity-dependent neuroprotector homeobox protein	29237092 29351928 30059200 30379171 31492838 34019948 35132862 35254053 35289036 37340703 38665916 39531497 39534244	GlyGen The O-GlcNAc Database
Q9H2T7	Ran-binding protein 17	30379171 37217939	GlyGen The O-GlcNAc Database
Q9H2U2	Inorganic pyrophosphatase 2, mitochondrial	28510447 29351928 30379171	GlyGen The O-GlcNAc Database
Q9H2W6	Large ribosomal subunit protein mL46	28510447 37217939 37340703	The O-GlcNAc Database

GlycoEpitope

Epitope ID: EP0004

Pathway

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Pathway Name	Organism
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Sus scrofa
Initial triggering of complement	Gallus gallus
Initial triggering of complement	Sus scrofa
Initial triggering of complement	Bos taurus
Initial triggering of complement	Rattus norvegicus
Initial triggering of complement	Canis familiaris
Initial triggering of complement	Homo sapiens
Initial triggering of complement	Xenopus tropicalis
Initial triggering of complement	Mus musculus
Lectin pathway of complement activation	Sus scrofa

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

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PubMed ID	Title	First Author	Publication Date	Source
886621	Crystallographic study of turkey egg-white lysozyme and its complex with a disaccharide	Sarma R	1977 Jul 05	PubChem
886300	Carbohydrate Composition of Hepatitis B Surface Antigen	Shiraishi H	1977 Jul 01	PubChem
330219	The inactivation of β‐galactosidase by N‐bromoacetyl‐β‐D‐glucosylamine	Viratelle OM	1977 Jul 01	PubChem
406155	Cell-surface glycosyltransferases in gastrulating chick embryos. II. Biochemical evidence for a surface localization of endogenous glycosyltransferase activities	Shur BD	1977 Jul 01	PubChem
198210	Detergent Influence on Rat‐Liver Galactosyltransferase Activities towards Different Acceptors	BRETZ R	1977 Jul 01	PubChem
885618	Comparison of Coccidioides immitis arthrospore, mycelium, and spherule cell walls, and influence of growth medium on mycelial cell wall composition	Wheat RW	1977 Jul	PubChem
326767	Mucopeptide Biosynthesis by Minicells of Escherichia coli	Reeve JN	1977 Jul	PubChem
902263	Determination of the linkages of disaccharides containing a 2-acetamido-2-deoxy sugar unit by solvent effects in circular dichroism	Dickinson HR	1977 Jul	PubChem
20160	[Localization of unpaired electrons in molecules of the substrate inhibitors of lysozyme. II. Oligosaccharides]	Avdeeva OS	1977 Jul	PubChem
268614	Structures of enzyme-substrate complexes of lysozyme	Pincus MR	1977 Jul	PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements