GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT1	UDP-Gal	G49108TO	R	G00055MO	R	3014508
B4GALT2	UDP-Gal	G49108TO	Benzyl-[beta]	G00055MO	Benzyl-[beta]	9405390
B3GALT2	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B3GALT5	UDP-Gal	G49108TO	R	G00056MO	R	10212226

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

Displaying entries **1 - 5** of 24 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GAL1	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GAL2	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GALNAC2	CMP-Neu5Ac	G49108TO	benzyl	11062056
CHST7	PAPS	G49108TO	-O-CH3	10781596
CHST3	PAPS	G49108TO	-O-CH3	10781596

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

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UniProt ID	Protein Name	Reference	Source
Q9HC96	Calpain-10	38253038	The O-GlcNAc Database
Q9HCB6	Spondin-1	29237092 37217939 38253038	The O-GlcNAc Database
Q9HCD5	Nuclear receptor coactivator 5	22121020 23301498 29237092 29351928 30059200 30379171 31492838 32119511 32574038 33214551 34019948 35132862 35138101 35254053 35289036 38253038 38665916 39302247 39531497 39534244	GlyGen The O-GlcNAc Database
Q9HCD6	Protein TANC2	28657654 29237092 29351928 30379171 30620550 31373491 31492838 32574038 35132862 35254053 35289036 37217939 37340703 38253038 38665916 39302247 39531497 39534244	GlyGen The O-GlcNAc Database
Q9HCE3	Zinc finger protein 532	29237092 30059200 30379171 31492838 35254053 35289036 38665916 39531497	GlyGen The O-GlcNAc Database
Q9HCF6	Transient receptor potential cation channel subfamily M member 3	30620550	GlyGen The O-GlcNAc Database
Q9HCH5	Synaptotagmin-like protein 2	29237092 29485866 30379171 30620550 39302247	GlyGen The O-GlcNAc Database
Q9HCJ0	Trinucleotide repeat-containing gene 6C protein	23301498 28411811 29351928 30397120 33214551 34019948 35132862 35254053 38665916 39531497	The O-GlcNAc Database
Q9HCK1	DBF4-type zinc finger-containing protein 2	23301498 29237092 30379171	GlyGen The O-GlcNAc Database
Q9HCK8	Chromodomain-helicase-DNA-binding protein 8	29351928 30379171 32119511 33214551 34019948 35132862 35138101 35254053 37340703 38665916 39302247 39531497 39534244	GlyGen The O-GlcNAc Database

GlycoEpitope

Epitope ID: EP0004

Pathway

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Pathway Name	Organism
Ficolins bind to repetitive carbohydrate structures on the target cell surface	Sus scrofa
Initial triggering of complement	Gallus gallus
Initial triggering of complement	Sus scrofa
Initial triggering of complement	Bos taurus
Initial triggering of complement	Rattus norvegicus
Initial triggering of complement	Canis familiaris
Initial triggering of complement	Homo sapiens
Initial triggering of complement	Xenopus tropicalis
Initial triggering of complement	Mus musculus
Lectin pathway of complement activation	Sus scrofa

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

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PubMed ID	Title	First Author	Publication Date	Source
39054338	Universal subunit vaccine protects against multiple SARS-CoV-2 variants and SARS-CoV	Wang G	2024 Jul 25	PubChem
39199296	Decoding the Role of O-GlcNAcylation in Hepatocellular Carcinoma	Zhou X	2024 Jul 25	PubChem
38953369	ROK family regulator NagC promotes prodigiosin biosynthesis independent of N -acetylglucosamine in Serratia sp. ATCC 39006	Liu W	2024 Jul 24	PubChem
39043656	The molecular basis underlying T cell specificity towards citrullinated epitopes presented by HLA-DR4	Loh TJ	2024 Jul 23	PubChem
39002130	Crimean-Congo hemorrhagic fever survivors elicit protective non-neutralizing antibodies that target 11 overlapping regions on glycoprotein GP38	Shin OS	2024 Jul 23	PubChem
39042673	Molecular mechanisms of proteoglycan-mediated semaphorin signaling in axon guidance	Nourisanami F	2024 Jul 23	PubChem
39044290	Chronic rapid eye movement sleep deprivation aggravates the pathogenesis of Alzheimer’s disease by decreasing brain O-GlcNAc cycling in mice	Kim DY	2024 Jul 23	PubChem
38856634	Broad Protection against Invasive Fungal Disease from a Nanobody Targeting the Active Site of Fungal β‐1,3‐Glucanosyltransferases	Redrado-Hernández S	2024 Jul 22	PubChem
39051333	Humanization of Pan-HLA-DR mAb 44H10 Hinges on Critical Residues in the Antibody Framework	Kassardjian A	2024 Jul 16	PubChem
38889725	H19 influenza A virus exhibits species-specific MHC class II receptor usage	Karakus U	2024 Jul 10	PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements