GlyCosmos Portal

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3D Structures

GLYCAM: DGlcpNAcb1-OH

GlycoShape

G49108TO

Displaying 1 entry
Archetype	α	β
G14843DJ	G68544GH	G49108TO

Organisms

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Organisms	Evidence
Streptococcus pneumoniae	GlyTouCan(bcsdb)
Mus musculus (house mouse)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope
Saccharomyces cerevisiae (brewer's yeast)	GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB)
Sus scrofa (pig)	GlyGen(OGlcNAcAtlas)
Rattus norvegicus (Norway rat)	GlyConnectStructure GlyGen(OGlcNAcAtlas) GlyGen(OGlcNAcDB) GlyGen(UniCarbKB) GlycoEpitope

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Muroidea [inference]

Muridae [inference]

Murinae [inference]

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Rattus [inference]

Rattus norvegicus (Norway rat)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Fungi [inference]

Dikarya [inference]

Ascomycota (ascomycetes) [inference]

saccharomyceta [inference]

Saccharomycotina (true yeasts) [inference]

Saccharomycetes [inference]

Saccharomycetales [inference]

Saccharomycetaceae [inference]

Saccharomyces [inference]

Saccharomyces cerevisiae (brewer's yeast)

Bacteria (eubacteria) [inference]

Terrabacteria group [inference]

Bacillota [inference]

Bacilli [inference]

Lactobacillales [inference]

Streptococcaceae [inference]

Streptococcus [inference]

Streptococcus pneumoniae

Viruses [inference]

Riboviria [inference]

Orthornavirae [inference]

Negarnaviricota [inference]

Polyploviricotina [inference]

Insthoviricetes [inference]

Articulavirales [inference]

Orthomyxoviridae [inference]

unclassified Orthomyxoviridae [inference]

unidentified influenza virus

GlycoGene Database (GGDB)

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT1	UDP-Gal	G49108TO	R	G00055MO	R	3014508
B4GALT2	UDP-Gal	G49108TO	Benzyl-[beta]	G00055MO	Benzyl-[beta]	9405390
B3GALT2	UDP-Gal	G49108TO	Lemieux	G00056MO	Lemieux	9417100
B3GALT5	UDP-Gal	G49108TO	R	G00056MO	R	10212226

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B4GALT5	(not applicable)	G49108TO	[beta]-S-pNP	G00055MO	[beta]-S-pNP	9435216
B4GALT4	UDP-Gal	G49108TO	[beta]-1-thio-p-Nitrophenyl	G00055MO	[beta]-1-thio-p-Nitrophenyl	9792633
B4GALT3	UDP-Gal	G49108TO	4-Me-lumbelyl-[beta]	G00055MO	4-Me-lumbelyl-[beta]	9405390
B4GALT4	UDP-Gal	G49108TO	[beta]-1-4-methyl-umbelliferyl	G00055MO	[beta]-1-4-methyl-umbelliferyl	9792633
B4GALT1	UDP-Gal	G49108TO		G00055MO		10580128

Displaying entries **1 - 5** of 24 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
ST6GAL1	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GAL2	CMP-Neu5Ac	G49108TO	para-nitrophenol	12603328
ST6GALNAC2	CMP-Neu5Ac	G49108TO	benzyl	11062056
CHST7	PAPS	G49108TO	-O-CH3	10781596
CHST3	PAPS	G49108TO	-O-CH3	10781596

KEGG BRITE Database

KEGG ID

Enzyme

2.4.1.255

Core Protein

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UniProt ID	Protein Name	Reference	Source
P08579	U2 small nuclear ribonucleoprotein B''	29351928 34019948 38665916	The O-GlcNAc Database
P08581	Hepatocyte growth factor receptor	34019948 35289036 37217939	GlyGen The O-GlcNAc Database
P08603	Complement factor H	35705054	GlyGen
P08621	U1 small nuclear ribonucleoprotein 70 kDa	28510447 30620550 32119511 33214551 34019948 34725712 35083852 37217939 38665916	GlyGen The O-GlcNAc Database
P08631	Tyrosine-protein kinase HCK	29351928	The O-GlcNAc Database
P08648	Integrin alpha-5	28510447 31202709 33214551 34019948 35254053 38665916	GlyGen The O-GlcNAc Database
P08651	Nuclear factor 1 C-type	29485866 30059200 31492838 33214551 34019948 35254053 35289036 38665916 39302247 39531497	GlyGen The O-GlcNAc Database
P08670	Vimentin	18653473 20068230 20305658 21740066 22121020 23271734 23301498 23576270 26853435 28262738 28657654 29237092 29351928 29513221 30059200 30379171 30620550 31373491 31492838 32522876 33214551 33465208 34019948 35008409 35083852 35132862 35254053 35289036 36240223 37217939 38665916 39302247 39531497 39534244	GlyGen The O-GlcNAc Database GlyConnect
P08708	Small ribosomal subunit protein eS17	22121020 28510447 33214551 34019948 35083852 35138101 37217939 38665916 39395807	The O-GlcNAc Database
P08727	Keratin, type I cytoskeletal 19	32574038 39531497	GlyGen The O-GlcNAc Database

GlycoEpitope

Epitope ID: EP0004

Pathway

Displaying entries **81 - 90** of **127** in total

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Pathway Name	Organism
E.coli O4-H5	Escherichia coli
E.coli O4-K52	Escherichia coli
E.coli O40	Escherichia coli
E.coli O41	Escherichia coli
E.coli O42	Escherichia coli
E.coli O45rel	Escherichia coli
E.coli O48	Escherichia coli
E.coli O53	Escherichia coli
E.coli O55	Escherichia coli
E.coli O56	Escherichia coli

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
LIN
1:1d(2+1)2n

WURCS

WURCS=2.0/1,1,0/[a2122h-1b_1-5_2*NCC/3=O]/1/

Literature

Displaying entries **11 - 20** of **10696** in total

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PubMed ID	Title	First Author	Publication Date	Source
37662363	The resting and ligand-bound states of the membrane-embedded human T-cell receptor–CD3 complex	Notti RQ	2024 Sep 20	PubChem
39302247	Systematic Evaluation of Affinity Enrichment Methods for O-GlcNAc Proteomics	Hou C	2024 Sep 20	PubChem
39291732	O‐<scp>GlcNAc</scp> modification of <scp>HSP27</scp> alters its protein interactions and promotes refolding of proteins through the <scp>BAG3</scp>/<scp>HSP70</scp> co‐chaperone	Javed A	2024 Sep 18	PubChem
39292388	Genome-based taxonomy and functional prediction of Sphingomonas fuzhouensis sp. nov. and Massilia phyllosphaerae sp. nov. isolated from Pennisetum sp. with plant growth-promoting potential	Yao L	2024 Sep 18	PubChem
38880081	Intermediate open state of CD4-bound HIV-1 env heterotrimers in asia CRFs	Li D	2024 Sep 17	PubChem
39287665	A Bioorthogonal Precision Tool for Human N-Acetylglucosaminyltransferase V	Liu Y	2024 Sep 17	PubChem
39269642	Yunchengibacter salinarum gen. nov., sp. nov., a novel bacterium of the family Kordiimonadaceae isolated from sediment in Yuncheng salt lake	Guo HR	2024 Sep 13	PubChem
39337387	O-GlcNAcylation: Crosstalk between Hemostasis, Inflammation, and Cancer	Vásquez Martínez IP	2024 Sep 13	PubChem
39266802	Design of Auto-Adaptive Drug Delivery System for Effective Delivery of Peptide Drugs to Overcoming Mucus and Epithelial Barriers	Ding R	2024 Sep 12	PubChem
39256594	O-GlcNAcylation in the osteoblast lineage—boosting the complexity of Wnt-stimulated bone formation	Pohl S	2024 Sep 10	PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

GlycoEpitope

Sequence Descriptors

International Collaboration

Acknowledgements