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MIRAGE
Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Source | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▲ | PubMed ID |
|---|---|---|---|---|---|---|---|
| Actinomyces naeslundii | Unknown | Lactotriaosylceramide (Lc3) | Oligoglycosylceramides | GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 2358461 | |
| Pseudomonas aeruginosa | PA-IIL | Blood group B antigen | Oligosaccharides | Gal(a1-3)[Fuc(a1-2)]Gal | Binding | 16762477 | |
| Pseudomonas aeruginosa | PA-IIL | Blood group A antigen | Oligosaccharides | GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc | Binding | 16762477 | |
| Ralstonia solanacearum | RSL (30-kDa proteins) | Blood group B antigen | Oligosaccharides | Gal(a1-3)[Fuc(a1-2)]Gal | Binding | 16762477 | |
| Ralstonia solanacearum | RSL (30-kDa proteins) | Blood group A antigen | Oligosaccharides | GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc | Binding | 16762477 | |
| Actinomyces viscosus | Type 2-fimbriae | unnamed ligand | Oligosaccharides | Gal(b1-4)Glc | Binding | 2885220 | |
| Actinomyces naeslundii | Type 2-fimbriae | unnamed ligand | Oligosaccharides | Gal(b1-4)Glc | Binding | 2885220 | |
| Escherichia coli | Verotoxin (1) | unnamed ligand | Oligosaccharides | Gal(a1-4)Gal(b1-4)Glc(b | Binding | 8574698 | |
| Norovirus | Capsid proteins | Blood group B antigen | Oligosaccharides | Gal(a1-3)[Fuc(a1-2)]Gal | Binding | 18809496 | |
| Norovirus | Capsid proteins | Blood group A antigen | Oligosaccharides | GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc | Binding | 18809496 | |
| Propionibacterium | Unknown | unnamed ligand | Oligosaccharides | Gal(b1-4)Glc(b | Binding | 12628483 | |
| Helicobacter pylori | Unknown | unnamed ligand | Oligosaccharides | Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]Gal | Binding | 16564136 | |
| Helicobacter pylori | BabA (blood group antigen binding adhesin) | Blood group B-Lewis b (BLeb) antigen | Oligosaccharides | Gal(a1-3)[Fuc(a1-2)]Gal(b1-3)[Fuc(a1-4)]GlcNAc | Binding | 15273394 | |
| Helicobacter pylori | BabA (blood group antigen binding adhesin) | Blood group A-Lewis b (ALeb) antigen | Oligosaccharides | GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)[Fuc(a1-4)]GlcNAc | Binding | 15273394 | |
| Helicobacter pylori | BabA (blood group antigen binding adhesin) | Blood group A antigen | Oligosaccharides | GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc | Binding | 15273394 | |
| Escherichia coli | Unknown | unnamed ligand | Oligosaccharides | Gal(a1-4)Gal(b1-4)Glc(b | Binding | 8574698 | |
| Norovirus | Unknown | Blood group B antigen | Oligosaccharides | Gal(a1-3)[Fuc(a1-2)]Gal | Binding | 18599458 | |
| Streptococcus pneumoniae | FcsSBP (fucose solute-binding protein) | Blood group B antigen | Oligosaccharides | Gal(a1-3)[Fuc(a1-2)]Gal | Binding | 19285508 | |
| Streptococcus pneumoniae | FcsSBP (fucose solute-binding protein) | Blood group A antigen | Oligosaccharides | GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc | Binding | 19285508 | |
| Norovirus | Unknown | Blood group A antigen | Oligosaccharides | GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc | Binding | 18599458 | |
| Escherichia coli | Unknown | unnamed ligand | Polyglycosylceramides | GalNAc(b1-3)[Gal(a1-3)]nGal(a1-4)Gal(b1-4)Glc(b1-1)Cer *n=1-5 | Binding | 2435422 | |
| Escherichia coli | SafS | α-sialyl-2-3-β-galactose | Disaccharides | Binding | 12640357 | ||
| Clostridium botulinum | Neurotoxin (type B) | Complex of synaptotagmin II and ganglioside GT1b or GD1a | Glycoconjugates | Binding | 9712688 | ||
| Clostridium botulinum | Unknown | Complex of synaptotagmin II and ganglioside GT1b or GD1a | Glycoconjugates | Binding | 9712688 | ||
| Paracoccidioides brasiliensis | Paracoccin | Laminin | Glycoproteins | Binding | 16476564 |
