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Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Source | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▲ | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
| Pseudomonas aeruginosa | Type 1-fimbriae | Mannose | Monosaccharides | Man | Binding | 2885220 | |
| Serratia marcescens | Type 1-fimbriae | Mannose | Monosaccharides | Man | Binding | 2885220 | |
| Shigella flexneri | Type 1-fimbriae | Mannose | Monosaccharides | Man | Binding | 2885220 | |
| Vibrio cholerae | Unknown | L-Fucose | Monosaccharides | Fuc | Binding | 2885220 | |
| Helicobacter pylori | Unknown | Fucose | Monosaccharides | Fuc | Binding | 8574698 | |
| Helicobacter pylori | Unknown | Fucose | Monosaccharides | Fuc | Binding | 16088272 | |
| Escherichia coli | Fimbrial lectin (adhesin) protein GafD (25-kDa) | N-Acetylglucosamine | Monosaccharides | GlcNAc | Binding | 7883703 | |
| Escherichia coli | Unknown | N-Acetylgalactosamine | Monosaccharides | GalNAc | Binding | 2885220 | |
| Escherichia coli | Unknown | Galactose | Monosaccharides | Gal | Binding | 2885220 | |
| Entamoeba histolytica | 52-kDa recombinant fusion proteins | N-Acetylgalactosamine | Monosaccharides | GalNAc | Binding | 8574698 | |
| Entamoeba histolytica | 52-kDa recombinant fusion proteins | Galactose | Monosaccharides | Gal | Binding | 8574698 | |
| Vibrio alginolyticus | CBP (chitin-binding proteins) 53-kDa | N-Acetylglucosamine | Monosaccharides | GlcNAc | Binding | 10049907 | |
| Vibrio cholerae | CBP (chitin-binding proteins) 36-kDa and 53-kDa | N-Acetylglucosamine | Monosaccharides | GlcNAc | Binding | 10049907 | |
| Treponema pallidum | Tp38 (TpMglB-2) lipoproteins | Glucose | Monosaccharides | Glc | Binding | 15060032 | |
| Vibrio harveyi | CBP (chitin-binding proteins) 53-kDa | N-Acetylglucosamine | Monosaccharides | GlcNAc | Binding | 10049907 | |
| Actinomyces naeslundii | Type-2 fimbrial lectins | Gb4 (Globoside; Globotetraose; P antigen) | Oligoglycosylceramides | GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer | Binding | 3804448 | |
| Helicobacter mustelae | Lectin-hemagglutinin adhesins | isoGb3 (Isoglobotriaosylceramide; iGb3) | Oligoglycosylceramides | Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 12704182 | |
| Helicobacter bilis | Lectin-hemagglutinin adhesins | isoGb3 (Isoglobotriaosylceramide; iGb3) | Oligoglycosylceramides | Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 12704182 | |
| Helicobacter pylori | Lectin-hemagglutinin adhesins | isoGb3 (Isoglobotriaosylceramide; iGb3) | Oligoglycosylceramides | Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 12704182 | |
| Escherichia coli | K88ab/K88ac/K88ad | nLc6 (Neolactohexaosylceramide) | Oligoglycosylceramides | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 11953368 | |
| Escherichia coli | K88ab/K88ac/K88ad | Asialo-GM2 (Gangliotriosylceramide; GgO3) | Oligoglycosylceramides | GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer | Binding | 11953368 | |
| Escherichia coli | K88ab/K88ac/K88ad | nLc4Cer (Neolactotetraosylceramide; Paragloboside) | Oligoglycosylceramides | Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 11953368 | |
| Escherichia coli | PapG (class III) | Gb5 (Forssman glycolipid) | Oligoglycosylceramides | GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer | Binding | 11454740 | |
| Escherichia coli | K99-fimbriae | Asialo-GM2 (Gangliotriosylceramide; GgO3) | Oligoglycosylceramides | GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer | Binding | 12628483 | |
| Helicobacter hepaticus | Lectin-hemagglutinin adhesins | isoGb3 (Isoglobotriaosylceramide; iGb3) | Oligoglycosylceramides | Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer | Binding | 12704182 |
