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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Source | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▲ | PubMed ID |
|---|---|---|---|---|---|---|---|
| Staphylococcus aureus | FnBPA (fibronectin binding protein) | Fibronectin | Glycoproteins | Binding | 1837266 | ||
| Salmonella enteritidis | AgfA (curli) | Plasminogen | Glycoproteins | Binding | 9973330 | ||
| Salmonella enteritidis | AgfA (curli) | Fibronectin | Glycoproteins | Binding | 9973330 | ||
| Salmonella enteritidis | AgfA (curli) | Human contact phase proteins | Glycoproteins | Binding | 9973330 | ||
| Staphylococcus epidermidis | 17-kDa HBP (Heparin-binding protein) | von Willebrand factor (VWF) | Glycoproteins | Binding | 11393292 | ||
| Staphylococcus epidermidis | 17-kDa HBP (Heparin-binding protein) | Thrombospondin (TSP) | Glycoproteins | Binding | 11393292 | ||
| Mycoplasma gallisepticum | Hlp3 (HMW3-like protein) | Fibronectin | Glycoproteins | Binding | 16495551 | ||
| Helicobacter pylori | Unknown | PGCs (polyglycosyl ceramides) | Glycosphingolipids | Binding | 12628483 | ||
| Helicobacter pylori | Unknown | Ganglio glycolipids | Glycosphingolipids | Binding | 16088272 | ||
| Influenza virus | Unknown | PGCs (polyglycosyl ceramides) | Glycosphingolipids | Binding | 12628483 | ||
| Hepatitis virus | Unknown | N-linked glycans | N-glycans | Binding | 11530212 | ||
| Rotavirus | DLP (Double-layered virus particles) | Asialo gangliosides | Neutral Glycosphingolipids | Binding | 10659372 | ||
| Campylobacter upsaliensis | Unknown | Phosphatidylserine (PS) | Non-glycosylated Lipids | Binding | 8926069 | ||
| Semliki forest virus | Unknown | Sphingomyelin | Non-glycosylated Lipids | Binding | 8574698 | ||
| New world arenavirus | Glycoprotein (GP) | O-mannosyl glycans on alpha-dystroglycan (DG) | O-glycans | Binding | 17360738 | ||
| Shigella dysenteriae | B subunit | α-hydroxylated Gb3 | Oligoglycosylceramides | Binding | 3519828 | ||
| Escherichia coli | hLT | Blood group A antigen analog | Oligosaccharides | Binding | 18809496 | ||
| Plasmodium falciparum | Unknown | N-linked oligosaccharides of glycophorins | Oligosaccharides | Binding | 8574698 | ||
| Borrelia burgdorferi | "DbpA, DbpB, Bgp" | Decorin | Proteoglycans | Binding | 16299269 | ||
| Pseudomonas aeruginosa | PA-IL (51-kDa) | Phenyl-β-thiogalactoside | Saccharides | Binding | 15049333 | ||
| Escherichia coli | S-fimbriae | α-Sialyl-2,3-lactose-containing receptors | Saccharides | Binding | 11401961 | ||
| Vibrio cholerae | N-methylphenyl-alanine pili | Fucose ve mannose carbohydrate | Saccharides | Binding | 12640357 | ||
| Anaplasma marginale | "MSP1a, MSP1b, MSP2" | unknown carbohydrate ligand | Saccharides | Binding | 16299269 | ||
| Legionella pneumophila | Adhesins | GD1a | Disialoglycosphingolipids | Human epithelial cells (respiratory tract) | NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer | Not Binding | 14687561 |
| Actinomyces viscosus | Unknown | GD1a | Disialoglycosphingolipids | Human brain | NeuAc(a2-3)Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer | Not Binding | 2358461 |
