Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Source Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB) June 1, 2016
Displaying entries 201 - 225 of 1840 in total
Species Pathogen Adherence Molecule Ligand Name Ligand Feature Target Source Glycan Sequence Binding PubMed ID ▼
Human immunodeficiency virus gp120 Sulfatide (CSE) Sulfoglycosphingolipids Human U373-MG glioma and SK-N-MC neuroblastoma cells, Human colon epithelial HT29 cells HSO3(-3)Gal(b1-1)Cer Binding 15973004
Mycoplasma pneumoniae Unknown Glycoproteins with terminal NeuAcα3Galβ4GlcNAc-sequences Glycoproteins NeuAc(a2-3)Gal(b1-4)GlcNAc Binding 15973004
Vibrio cholerae Cholera toxin GM1 Monosialoglycosphingolipids Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Clostridium tetani Tetanus neurotoxin GM2(NeuAc) Monosialoglycosphingolipids GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Clostridium botulinum Neurotoxin (type A/B) GM2(NeuAc) Monosialoglycosphingolipids GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Clostridium perfringens Delta toxin GM2(NeuAc) Monosialoglycosphingolipids GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Vibrio cholerae Unknown GM1 Monosialoglycosphingolipids Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Clostridium perfringens Unknown GM2(NeuAc) Monosialoglycosphingolipids GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Clostridium tetani Unknown GM2(NeuAc) Monosialoglycosphingolipids GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Clostridium botulinum Unknown GM2(NeuAc) Monosialoglycosphingolipids GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Escherichia coli SfaA Sulfatide (CSE) Sulfoglycosphingolipids HSO3(-3)Gal(b1-1)Cer Binding 15973004
Escherichia coli S-fimbriae Sulfatide (CSE) Sulfoglycosphingolipids HSO3(-3)Gal(b1-1)Cer Binding 15973004
Bordetella pertussis Unknown Sulfatide (CSE) Sulfoglycosphingolipids HSO3(-3)Gal(b1-1)Cer Binding 15973004
Influenza virus Unknown Neuraminic acid-containing sialoglycoproteins Glycoproteins Binding 15973004
Mycoplasma pneumoniae Unknown GSLs containing terminal Gal(3SO4)β1-residues Glycosphingolipids Binding 15973004
Human immunodeficiency virus gp120 Galactosylceramide (Galactocerebroside) Monoglycosylceramides Human U373-MG glioma and SK-N-MC neuroblastoma cells, Human colon epithelial HT29 cells Gal(b1-1)Cer Binding 15973004
Pseudomonas aeruginosa Unknown Asialo-GM2 (Gangliotriosylceramide; GgO3) Oligoglycosylceramides Cystic fibrosis patients GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Escherichia coli SfaA Galactosylceramide (Galactocerebroside) Monoglycosylceramides Gal(b1-1)Cer Binding 15973004
Escherichia coli S-fimbriae Galactosylceramide (Galactocerebroside) Monoglycosylceramides Gal(b1-1)Cer Binding 15973004
Escherichia coli F1C Galactosylceramide (Galactocerebroside) Monoglycosylceramides Gal(b1-1)Cer Binding 15973004
Escherichia coli P-fimbriae Gb4 (Globoside; Globotetraose; P antigen) Oligoglycosylceramides GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Bordetella pertussis Unknown Asialo-GM2 (Gangliotriosylceramide; GgO3) Oligoglycosylceramides GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer Binding 15973004
Helicobacter pylori BabA (blood group antigen binding adhesin) Blood group Lewis b (Leb) antigen Oligosaccharides Binding 15973004
Escherichia coli S-fimbriae NeuAcα3Galβ-containing glycoproteins Glycoproteins Lumenal surfaces of the vascular endothelium in the neonatal rat brain NeuAc(a2-3)Gal(b Binding 15973004
Escherichia coli SfaS NeuAcα3Galβ-containing glycoproteins Glycoproteins Lumenal surfaces of the vascular endothelium in the neonatal rat brain NeuAc(a2-3)Gal(b Binding 15973004

About Release Notes Help Feedback

Click here to visit the beta site.


International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


Logo License Policies Site Map

Contact: support@glycosmos.org

This work is licensed under Creative Commons Attribution 4.0 International


GlyCosmos Portal v4.0.0

Last updated: August 19, 2024