GlyCosmos Portal

3D Structures

GLYCAM: DGalpNAcb1-4DGalpb1-4DGlcpb1-OH

GlycoShape

G90562PB

Displaying 1 entry
Archetype	α	β
G40990LB	G48040YP	G90562PB

Organisms

Displaying entries **1 - 5** of 13 in total

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Organisms	Evidence
Macaca fuscata (Japanese macaque)	GlyTouCan(glycome-db)
Cricetulus griseus (Chinese hamster)	GlyTouCan(glycome-db)
Mus musculus (house mouse)	GlyTouCan(glycome-db)
Soricidae (shrews)	GlyTouCan(glycome-db)
Rattus	GlyTouCan(glycome-db)

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Euarchontoglires [inference]

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Hystricomorpha (guinea pigs and others) [inference]

Caviidae (cavies) [inference]

Cavia (guinea pigs) [inference]

Cavia porcellus (domestic guinea pig)

Myomorpha (mice and others) [inference]

Muroidea [inference]

Cricetidae [inference]

Cricetinae (hamsters) [inference]

Cricetulus [inference]

Cricetulus griseus (Chinese hamster)

Muridae [inference]

Murinae [inference]

Rattus

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Cercopithecoidea [inference]

Cercopithecidae (Old World monkeys) [inference]

Cercopithecinae [inference]

Macaca (macaques) [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Laurasiatheria [inference]

Eulipotyphla (hedgehogs, shrews, moles and others) [inference]

Soricidae (shrews)

Crocidurinae [inference]

Suncus (musk shrews) [inference]

Suncus murinus (house shrew)

Sauropsida (sauropsids) [inference]

Sauria (diapsids) [inference]

Archelosauria [inference]

Archosauria [inference]

Dinosauria [inference]

Saurischia [inference]

Theropoda [inference]

Coelurosauria [inference]

Aves (birds) [inference]

Neognathae [inference]

Galloanserae [inference]

Galliformes (landfowls) [inference]

Phasianidae (turkeys) [inference]

Perdicinae [inference]

Coturnix [inference]

Coturnix japonica (Japanese quail)

Amphibia (amphibians) [inference]

Batrachia [inference]

Anura (frogs and toads) [inference]

Pipoidea [inference]

Pipidae (tongueless frogs) [inference]

Xenopodinae [inference]

Xenopus [inference]

Xenopus laevis (African clawed frog)

Protostomia [inference]

Spiralia [inference]

Lophotrochozoa [inference]

Mollusca (mollusks) [inference]

Bivalvia (bivalves)

Autobranchia [inference]

Heteroconchia [inference]

Palaeoheterodonta [inference]

Unionida [inference]

Unionoidea [inference]

Unionidae [inference]

Gonideinae [inference]

Sinohyriopsis [inference]

Sinohyriopsis schlegelii

GlycoGene Database (GGDB)

Displaying **all 2** entries
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B3GALT4	UDP-Gal	G90562PB	Cer	G21856LC	Cer	9312075
B4GALNT1	UDP-GalNAc	G84224TW	Cer	G90562PB	Cer	1601877

Displaying **all 2** entries
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
B3GALT4	UDP-Gal	G90562PB	Cer	G21856LC	Cer	9312075 9582303
B4GALNT1	UDP-GalNAc	G84224TW	Cer	G90562PB	Cer	1601877 7890749

Displaying entries **1 - 5** of 6 in total

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Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
CHST2	PAPS	G90562PB		8870671
B3GALT2	UDP-Gal	G90562PB	Cer	9582303
B3GALT1	UDP-Gal	G90562PB	Cer	9582303
B4GALT3	UDP-Gal	G90562PB	Cer	9405390
B3GNT6	UDP-GlcNAc	G90562PB		11821425

KEGG BRITE Database

KEGG ID

G00123

Enzyme

References

2430018

Reactions

Displaying **all 2** entries
KEGG Reaction	Enzyme	Acceptor	Product
R05956	2.4.1.62	G90562PB	G21856LC
R05938	2.4.1.92	G84224TW	G90562PB

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:b-dgal-HEX-1:5
4s:n-acetyl
LIN
1:1o(4+1)2d
2:2o(4+1)3d
3:3d(2+1)4n

WURCS

WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3/a4-b1_b4-c1

Literature

Displaying **all 9** entries
PubMed ID	Title	First Author	Publication Date	Source
27038508	The details of glycolipid glycan hydrolysis by the structural analysis of a family 123 glycoside hydrolase from Clostridium perfringens	Noach I	2016 Mar 30	PubChem
12145278	Molecular cloning and characterization of a novel chondroitin sulfate glucuronyltransferase that transfers glucuronic acid to N-acetylgalactosamine	Gotoh M	2002 Oct 11	PubChem
11821425	Molecular cloning and characterization of a novel UDP-GlcNAc:GalNAc-peptide beta1,3-N-acetylglucosaminyltransferase (beta 3Gn-T6), an enzyme synthesizing the core 3 structure of O-glycans	Iwai T	2002 Apr 12	PubChem
9582303	A family of human beta3-galactosyltransferases. Characterization of four members of a UDP-galactose:beta-N-acetyl-glucosamine/beta-nacetyl-galactosamine beta-1,3-galactosyltransferase family	Amado M	1998 May 22	PubChem
9312075	Expression cloning of rat cDNA encoding UDP-galactose:GD2 beta1,3-galactosyltransferase that determines the expression of GD1b/GM1/GA1	Miyazaki H	1997 Oct 03	PubChem
9405390	A family of human beta4-galactosyltransferases. Cloning and expression of two novel UDP-galactose:beta-n-acetylglucosamine beta1, 4-galactosyltransferases, beta4Gal-T2 and beta4Gal-T3	Almeida R	1997 Dec 19	PubChem
8870671	Characterization of a rat liver Golgi sulphotransferase responsible for the 6-O-sulphation of N-acetylglucosamine residues in beta-linkage to mannose: role in assembly of sialyl-galactosyl-N-acetylglucosamine 6-sulphate sequence of N-linked oligosaccharides	Spiro RG	1996 Oct 01	PubChem
7890749	Substrate specificity of beta 1,4-N-acetylgalactosaminyltransferase in vitro and in cDNA-transfected cells. GM2/GD2 synthase efficiently generates asialo-GM2 in certain cells	Yamashiro S	1995 Mar 17	PubChem
1601877	Expression cloning of beta 1,4 N-acetylgalactosaminyltransferase cDNAs that determine the expression of GM2 and GD2 gangliosides.	Nagata Y	1992 Jun 15	PubChem

PubAnnotation

Displaying entries **1 - 5** of 8 in total

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Title	Authors	Source	Publication Date	PubMed ID
Carbohydrate to carbohydrate interaction in development process and cancer progression.	Handa K Hakomori SI	Glycoconj J	2012 Dec	22610315
Oligosaccharide specificity of galectins: a search by frontal affinity chromatography.	Hirabayashi J Hashidate T Arata Y Nishi N Nakamura T Hirashima M Urashima T Oka T Futai M Muller WE Yagi F Kasai K	Biochim Biophys Acta	2002 Sep 19	12223272
Kidney sulfatides in mouse models of inherited glycosphingolipid disorders: determination by nano-electrospray ionization tandem mass spectrometry.	Sandhoff R Hepbildikler ST Jennemann R Geyer R Gieselmann V Proia RL Wiegandt H Grone HJ	J Biol Chem	2002 Jun 7	11919180
Beta1,4-N-acetylgalactosaminyltransferase--GM2/GD2 synthase: a key enzyme to control the synthesis of brain-enriched complex gangliosides.	Furukawa K Takamiya K Furukawa K	Biochim Biophys Acta	2002 Dec 19	12417418
Physicochemical characterisation of the two active site mutants Trp(52)-->Phe and Asp(55)-->Val of glucoamylase from Aspergillus niger.	Christensen T Frandsen TP Kaarsholm NC Svensson B Sigurskjold BW	Biochim Biophys Acta	2002 Dec 16	12445478

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

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Other Information

Tools

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Guidelines

Summary

External Links

KEGG BRITE Database

Sequence Descriptors

International Collaboration

Acknowledgements