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GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
All Resources
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GALAXY
MCAW
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Guidelines
MIRAGE
G56682BC
Summary
- GlyTouCan ID
-
G56682BC
- IUPAC Condensed
- Gal(b1-3)[Neu5Ac(a2-6)]GalNAc(a1-
- Motifs
- O-Glycan core 1 Sialyl Tn antigen T antigen TF antigen
- Subsumption Level
- Fully-defined saccharide
- Monoisotopic Mass
- 674.24
3D Structures
G01040ZV
G28694FA
Organisms
| Organisms | Evidence |
|---|---|
| synthetic construct | |
| Mus musculus (house mouse) | |
| Canis lupus familiaris (dog) | |
| Danio rerio (zebrafish) | |
| Sus scrofa (pig) |
Taxonomic Hierarchy
root
cellular organisms [inference]
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| ST6GALNAC1 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr | |
| ST6GALNAC2 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| ST6GALNAC1 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr | |
| ST6GALNAC1 | CMP-Neu5Ac |
G00031MO
|
O-glycan Synthesis |
G56682BC
|
O-glycan Synthesis | |
| ST6GALNAC2 | CMP-Neu5Ac |
G00031MO
|
Ser/Thr |
G56682BC
|
Ser/Thr | |
| FUT2 | GDP-Fuc |
G56682BC
|
O-glycan Synthesis |
G47180UC
|
O-glycan Synthesis |
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| P00743 | Coagulation factor X | ||
| P01215 | Glycoprotein hormones alpha chain | ||
| P01375 | Tumor necrosis factor | ||
| P01563 | Interferon alpha-2 | ||
| P01588 | Erythropoietin | ||
| P01824 | Immunoglobulin heavy variable 4-39 | ||
| P01876 | Immunoglobulin heavy constant alpha 1 | ||
| P01880 | Immunoglobulin heavy constant delta | ||
| P02668 | Kappa-casein | ||
| P02724 | Glycophorin-A |
GlycomeAtlas
Tissues in which this glycan is expressed are highlighted in yellow.
- Danio rerio
Literature
- Tissue
-
- brain
- gill
- heart
- intestine
- liver
- skin gland
- testis
- Reference
- Yamakawa N et al. Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. Nat Commun. 2018;9(1):4647. Published 2018 Nov 7. doi:10.1038/s41467-018-06950-3
- DOI
- 10.1038/s41467-018-06950-3
Localization sites organized by hierarchy by Uber-anatomy ontology (UBERON)
Sequence Descriptors
- GlycoCT
-
RES 1b:a-dgal-HEX-1:5 2s:n-acetyl 3b:b-dgal-HEX-1:5 4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 5s:n-acetyl LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:1o(6+2)4d 4:4d(5+1)5n
- WURCS
- WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2
Literature
| PubMed ID | Title | First Author | Publication Date | Source |
|---|---|---|---|---|
| 11123894 | O-Glycan Analysis of Natural Human Neutrophil Gelatinase B Using a Combination of Normal Phase- HPLC and Online Tandem Mass Spectrometry: Implications for the Domain Organization of the Enzyme | Mattu TS | 2000 Dec 01 |
|
| 10742600 | Molecular cloning and functional expression of human ST6GalNAc II. Molecular expression in various human cultured cells | Samyn-Petit B | 2000 Apr 06 |
|
| 10536037 | Cloning and expression of a human gene encoding an N-acetylgalactosamine-alpha2,6-sialyltransferase (ST6GalNAc I): a candidate for synthesis of cancer-associated sialyl-Tn antigens | Ikehara Y | 1999 Nov 01 |
|
| 9442070 | The Glycosylation and Structure of Human Serum IgA1, Fab, and Fc Regions and the Role of N-Glycosylation on Fcα Receptor Interactions | Mattu TS | 1998 Jan 23 |
|
| 9492296 | Structural study of the O-linked sugar chains of human leukocyte tyrosine phosphatase CD45 | Furukawa K | 1998 Jan 15 |
|
| 9530955 | Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols | Bhavanandan VP | 1998 Jan |
|
| 9654101 | Structural characterisation of N-linked and O-linked oligosaccharides derived from interferon-alpha2b and interferon-alpha14c produced by Sendai-virus-induced human peripheral blood leukocytes | Nyman TA | 1998 Apr 15 |
|
| 8631363 | O-glycosylated species of natural human tumor-necrosis factor-alpha | Takakura-Yamamoto R | 1996 Jan 15 |
|
| 8054719 | Structures of monosialyl oligosaccharides isolated from the respiratory mucins of a non-secretor (O, Lea+b-) patient suffering from chronic bronchitis. Characterization of a novel type of mucin carbohydrate core structure | van Halbeek H | 1994 Apr |
|
| 8460945 | Structures of Mucin-Type Sugar Chains on Human Erythropoietins Purified from Urine and the Culture Medium of Recombinant Chinese Hamster Ovary Cells | Inoue N | 1993 Mar |
|
