Submissions
GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
All Resources
Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / OrganismsTools
SugarDrawer
GlycanBuilder
Glycan Converters
GlycoMaple
GlycomeAtlas
LM-GlycomeAtlas
GALAXY
MCAW
GlycoSim
GRable
Guidelines
MIRAGE
G57321FI
Summary
- GlyTouCan ID
-
G57321FI
- IUPAC Condensed
- GalNAc(a1-
- Motifs
- Tn antigen
Organisms
| Organisms | Evidence |
|---|---|
| Ovis aries (sheep) | |
| Cricetulus griseus (Chinese hamster) | |
| Mus musculus (house mouse) | |
| Bos taurus (domestic cattle) | |
| Escherichia coli |
Taxonomic Hierarchy
root
cellular organisms [inference]
Eukaryota (eucaryotes) [inference]
Opisthokonta [inference]
Metazoa (metazoans) [inference]
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| C1GALT1 | (not applicable) |
G57321FI
|
Ser/Thr |
G00031MO
|
Ser/Thr | |
| ST6GALNAC1 | CMP-Neu5Ac |
G57321FI
|
Ser/Thr |
G36123IU
|
Ser/Thr | |
| ST6GALNAC1 | CMP-Neu5Ac |
G57321FI
|
O-glycan Synthesis |
G36123IU
|
O-glycan Synthesis | |
| B3GNT6 | UDP-GlcNAc |
G57321FI
|
[alpha]-pNP |
G00035MO
|
[alpha]-pNP |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| C1GALT1 | (not applicable) |
G57321FI
|
Ser/Thr |
G00031MO
|
Ser/Thr | |
| ST6GALNAC1 | CMP-Neu5Ac |
G57321FI
|
Ser/Thr |
G36123IU
|
Ser/Thr | |
| ST6GALNAC4 | CMP-Neu5Ac |
G57321FI
|
benzyl |
G36123IU
|
benzyl | |
| ST6GALNAC1 | CMP-Neu5Ac |
G57321FI
|
O-glycan Synthesis |
G36123IU
|
O-glycan Synthesis | |
| ST6GALNAC1 | CMP-Neu5Ac |
G57321FI
|
[Ala-Thr(*)-Ala]2-7 |
G36123IU
|
[Ala-Thr(*)-Ala]2-7 |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Reference |
|---|---|---|---|---|
| ST6GALNAC3 | CMP-Neu5Ac |
G57321FI
|
Ser/Thr | |
| ST6GAL2 | CMP-Neu5Ac |
G57321FI
|
para-nitrophenol | |
| ST6GALNAC2 | CMP-Neu5Ac |
G57321FI
|
benzyl | |
| ST6GALNAC1 | CMP-Neu5Ac |
G57321FI
|
[alpha]-Bz | |
| ST6GALNAC2 | CMP-Neu5Ac |
G57321FI
|
Ser/Thr |
KEGG BRITE Database
G00041MO
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| Q9UKP4 | A disintegrin and metalloproteinase with thrombospondin motifs 7 | ||
| Q9UKU9 | Angiopoietin-related protein 2 | ||
| Q9ULB5 | Cadherin-7 | ||
| Q9ULC8 | Palmitoyltransferase ZDHHC8 | ||
| Q9ULF5 | Zinc transporter ZIP10 | ||
| Q9ULI3 | Protein HEG homolog 1 | ||
| Q9UMD9 | Collagen alpha-1(XVII) chain | ||
| Q9UMX5 | Neudesin | ||
| Q9UNA0 | A disintegrin and metalloproteinase with thrombospondin motifs 5 | ||
| Q9UNE0 | Tumor necrosis factor receptor superfamily member EDAR |
GlycoEpitope
- Epitope ID
- EP0021
Pathway
| Pathway Name | Organism |
|---|---|
| Ficolins bind to repetitive carbohydrate structures on the target cell surface | Sus scrofa |
| Initial triggering of complement | Mus musculus |
| Initial triggering of complement | Gallus gallus |
| Initial triggering of complement | Xenopus tropicalis |
| Initial triggering of complement | Sus scrofa |
| Initial triggering of complement | Bos taurus |
| Initial triggering of complement | Canis familiaris |
| Initial triggering of complement | Rattus norvegicus |
| Initial triggering of complement | Homo sapiens |
| Lectin pathway of complement activation | Bos taurus |
Sequence Descriptors
- GlycoCT
-
RES 1b:a-dgal-HEX-1:5 2s:n-acetyl LIN 1:1d(2+1)2n
- WURCS
- WURCS=2.0/1,1,0/[a2112h-1a_1-5_2*NCC/3=O]/1/
Literature
| PubMed ID | Title | First Author | Publication Date | Source |
|---|---|---|---|---|
| 31638776 | Synthesis and Characterization of Versatile O-Glycan Precursors for Cellular O-Glycomics | Zhang Q | 2019 Oct 22 |
|
| 31617782 | Effect of modular conjugation strategy forN-acetylgalactosamine-targeted antisense oligonucleotides | Yamamoto T | 2019 Oct 16 |
|
| 31609614 | Ring Puckering Landscapes of Glycosaminoglycan-Related Monosaccharides from Molecular Dynamics Simulations | Alibay I | 2019 Oct 14 |
|
| 31393218 | Ligand Conjugated Multimeric siRNAs Enable Enhanced Uptake and Multiplexed Gene Silencing | Brown JM | 2019 Oct 01 |
|
| 31097425 | Plasma and Liver Protein Binding of N-Acetylgalactosamine–Conjugated Small Interfering RNA | Humphreys SC | 2019 Oct |
|
| 31270142 | In Vitro Drug-Drug Interaction Evaluation of GalNAc Conjugated siRNAs Against CYP450 Enzymes and Transporters | Ramsden D | 2019 Oct |
|
| 31766509 | A Study for the Access to a Semi-synthetic Regioisomer of Natural Fucosylated Chondroitin Sulfate with Fucosyl Branches on N-acetyl-Galactosamine Units | Vessella G | 2019 Nov 21 |
|
| 31697432 | On the structure and function of Escherichia coli YjhC: An oxidoreductase involved in bacterial sialic acid metabolism | Horne CR | 2019 Nov 21 |
|
| 31710480 | Chemically Controlled Helical Polymorphism in Protein Tubes by Selective Modulation of Supramolecular Interactions | Li Z | 2019 Nov 11 |
|
| 31682911 | Moving RNA interference beyond the liver | Schwendeman SP | 2019 Nov 10 |
|
PubAnnotation
