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Repository for lectin-assisted multimodality data
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Other Information
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MIRAGE
G80858MF

Summary
GlyTouCan ID
G80858MF
IUPAC Condensed
GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1-
Motifs
N-Glycan complex
Subsumption Level
Fully-defined saccharide
Monoisotopic Mass
1462.54
GlyConnect structure
GlyGen
ChEBI
PubChem Compound
PubChem Substance
CarbBank
3D Structures
GLYCAM
DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH
GlycoShape
G80858MF
Displaying 1 entry
Archetype α β
G89637WE
G95238UV
G80858MF
Organisms
Displaying entries 1 - 5 of 7 in total
Organisms Evidence
Mus musculus (house mouse)
Rattus norvegicus (Norway rat)
Homo sapiens (human)
Cricetinae (hamsters)
Drosophila melanogaster (fruit fly)
Taxonomic Hierarchy
GlycoGene Database (GGDB)
Displaying entry 6 - 6 of 6 in total
Gene Symbol Donor Acceptor Reducing terminal(Acceptor) Product Reducing terminal(Product) Reference
MGAT2 UDP-GlcNAc
G07483YN
Asn-Xaa
G80858MF
Asn-Xaa
KEGG BRITE Database
KEGG ID
Enzyme
References
Reactions
Displaying all 2 entries
KEGG Reaction Enzyme Acceptor Product
R05988
R05989
GALAXY
Glucose Units
ODS
12.3
Amide
5.5
Degrading Enzymes
Displaying entries 1 - 5 of 8 in total
Enzyme Substrate Product
Desulfation
G59357BZ
G80858MF
Desulfation
G65458HJ
G80858MF
Desulfation
G54219FG
G80858MF
α-Fucosidase
G80858MF
G39213VZ
β-Galactosidase
G27919IH
G80858MF
GALAXY: Glycoanalysis by the three axes of MS and chromatography.
Core Protein
Displaying entries 1 - 10 of 39 in total
UniProt ID Protein Name Reference Source
O15389 Sialic acid-binding Ig-like lectin 5
O75015 Low affinity immunoglobulin gamma Fc region receptor III-B
P00451 Coagulation factor VIII
P00747 Plasminogen
P01579 Interferon gamma
P01854 Immunoglobulin heavy constant epsilon
P01857 Immunoglobulin heavy constant gamma 1
P01859 Immunoglobulin heavy constant gamma 2
P01860 Immunoglobulin heavy constant gamma 3
P01861 Immunoglobulin heavy constant gamma 4
Sequence Descriptors
GlycoCT
RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:a-dman-HEX-1:5
10b:b-dglc-HEX-1:5
11s:n-acetyl
12b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:6o(2+1)7d
7:7d(2+1)8n
8:5o(6+1)9d
9:9o(2+1)10d
10:10d(2+1)11n
11:1o(6+1)12d
WURCS
WURCS=2.0/4,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-3-1-4/a4-b1_a6-h1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1
Literature
Displaying entries 21 - 30 of 54 in total
PubMed ID Title First Author Publication Date Source
11500028 Sialylation of human IgG-Fc carbohydrate by transfected rat alpha2,6-sialyltransferase Jassal R 2001 Aug 17
  • GlyGen
  • PubChem
10782293 N-Linked oligosaccharide structures in the diamine oxidase from porcine kidney Huang Y 2000 Jan 12
  • GlyGen
  • PubChem
11180632 Structure of the asparagine-linked sugar chains of porcine kidney and human urine cerebroside sulfate activator protein Faull KF 2000 Dec
  • GlyGen
  • PubChem
10764830 Remodeling of sugar chain structures of human interferon-gamma Fukuta K 2000 Apr
  • GlyGen
  • PubChem
10207177 Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells Rudd PM 1999 May
  • GlyGen
  • PubChem
10406848 Glycosylation of a CNS-specific extracellular matrix glycoprotein, tenascin-R, is dominated by O-linked sialylated glycans and 'brain-type' neutral N-glycans Zamze S 1999 Aug
  • GlyGen
  • PubChem
9083032 Differential N-glycan patterns of secreted and intracellular IgG produced in Trichoplusia ni cells Hsu TA 1997 Apr 4
  • GlyGen
8612632 Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains Endo T 1996 Mar 01
  • GlyGen
  • PubChem
8943402 Multiple interactions of IgG with its core oligosaccharide can modulate recognition by complement and human Fc gamma receptor I and influence the synthesis of its oligosaccharide chains Lund J 1996 Dec 01
  • GlyGen
  • PubChem
8969451 Elucidation of N-linked oligosaccharide structures of recombinant human factor VIII using fluorophore-assisted carbohydrate electrophoresis HP K 1996 Dec
  • GlyGen
  • PubChem
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