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Glycomics MS raw data Repository
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Repository for lectin-assisted multimodality data
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Other Information
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Standards Ontologies Notations
Guidelines
MIRAGE
G80858MF

Summary
GlyTouCan ID
G80858MF
IUPAC Condensed
GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1-
Motifs
N-Glycan complex
Subsumption Level
Fully-defined saccharide
Monoisotopic Mass
1462.54
GlyConnect structure
GlyGen
ChEBI
PubChem Compound
PubChem Substance
CarbBank
3D Structures
GLYCAM
DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH
GlycoShape
G80858MF
Displaying 1 entry
Archetype α β
G89637WE
G95238UV
G80858MF
Organisms
Displaying entries 1 - 5 of 7 in total
Organisms Evidence
Mus musculus (house mouse)
Rattus norvegicus (Norway rat)
Homo sapiens (human)
Cricetinae (hamsters)
Drosophila melanogaster (fruit fly)
Taxonomic Hierarchy
GlycoGene Database (GGDB)
Displaying entries 1 - 5 of 6 in total
Gene Symbol Donor Acceptor Reducing terminal(Acceptor) Product Reducing terminal(Product) Reference
FUT8 GDP-Fuc
G39213VZ
Free
G80858MF
Free
MGAT4B UDP-GlcNAc
G80858MF
PA
G61207RZ
PA
MGAT4A UDP-GlcNAc
G80858MF
PA
G61207RZ
PA
MGAT4A UDP-GlcNAc
G80858MF
Asn-X
G61207RZ
Asn-X
MGAT3 UDP-GlcNAc
G80858MF
Asn-X
G30159WR
Asn-X
KEGG BRITE Database
KEGG ID
Enzyme
References
Reactions
Displaying all 2 entries
KEGG Reaction Enzyme Acceptor Product
R05988
R05989
GALAXY
Glucose Units
ODS
12.3
Amide
5.5
Degrading Enzymes
Displaying entries 1 - 5 of 8 in total
Enzyme Substrate Product
Desulfation
G59357BZ
G80858MF
Desulfation
G65458HJ
G80858MF
Desulfation
G54219FG
G80858MF
α-Fucosidase
G80858MF
G39213VZ
β-Galactosidase
G27919IH
G80858MF
GALAXY: Glycoanalysis by the three axes of MS and chromatography.
Core Protein
Displaying entries 1 - 10 of 39 in total
UniProt ID Protein Name Reference Source
O15389 Sialic acid-binding Ig-like lectin 5
O75015 Low affinity immunoglobulin gamma Fc region receptor III-B
P00451 Coagulation factor VIII
P00747 Plasminogen
P01579 Interferon gamma
P01854 Immunoglobulin heavy constant epsilon
P01857 Immunoglobulin heavy constant gamma 1
P01859 Immunoglobulin heavy constant gamma 2
P01860 Immunoglobulin heavy constant gamma 3
P01861 Immunoglobulin heavy constant gamma 4
Sequence Descriptors
GlycoCT
RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:a-dman-HEX-1:5
10b:b-dglc-HEX-1:5
11s:n-acetyl
12b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:6o(2+1)7d
7:7d(2+1)8n
8:5o(6+1)9d
9:9o(2+1)10d
10:10d(2+1)11n
11:1o(6+1)12d
WURCS
WURCS=2.0/4,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-3-1-4/a4-b1_a6-h1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1
Literature
Displaying entries 1 - 10 of 54 in total
PubMed ID Title First Author Publication Date Source
33242084 Post-natal developmental changes in the composition of the rat neocortical N-glycome Klarić Thomas S 2021-06-03
  • GlyGen
33737529 Toward robust N-glycomics of various tissue samples that may contain glycans with unknown or unexpected structures Suzuki Noriko 2021-03-18
  • GlyGen
34834161 Glycan Profile Analysis of Engineered Trastuzumab with Rationally Added Glycosylation Sequons Presents Significantly Increased Glycan Complexity Cruz E 2021 Oct 20
  • GlyGen
  • PubChem
33383989 Bisecting GlcNAc Protein N-Glycosylation Is Characteristic of Human Adipogenesis Wongtrakul-Kish K 2021 Feb 5
  • GlyGen
34106099 N-Glycosylation in isolated rat nerve terminals Matthies I 2021 Aug 1
  • GlyGen
31889402 Glycan biomarkers for Alzheimer disease correlate with T-tau and P-tau in cerebrospinal fluid in subjective cognitive impairment Schedin-Weiss Sophia 2020-08
  • GlyGen
32841605 Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor Zhao P 2020 Oct 07
  • GlyGen
  • PubChem
30674035 Exploring Cerebrospinal Fluid IgG N-Glycosylation as Potential Biomarker for Amyotrophic Lateral Sclerosis Costa J 2019 Jan 23
  • GlyGen
29671580 Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein Sun S 2018 Apr 19
  • GlyGen
  • PubChem
26455811 CSF N-glycoproteomics for early diagnosis in Alzheimer's disease Palmigiano Angelo 2016-01-10
  • GlyGen
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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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Last updated: August 4, 2025