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GlyTouCan
Glycan Structure Repository
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Glycoconjugate Repository
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Glycomics MS raw data Repository
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Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
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GALAXY
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MIRAGE
G39213VZ
Summary
- GlyTouCan ID
-
G39213VZ
- IUPAC Condensed
- GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-
- Motifs
- N-Glycan complex
- Subsumption Level
- Fully-defined saccharide
- Monoisotopic Mass
- 1316.49
G84678BK
G13577LP
3D Structures
- GlycoNAVI
- G39213VZ
- GlycoShape
- G39213VZ
- GLYCAM
- DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH
Organisms
| Organisms | Evidence |
|---|---|
| Mus musculus (house mouse) | |
| Gallus gallus (chicken) | |
| Drosophila melanogaster (fruit fly) | |
| Homo sapiens (human) | |
| Viruses |
Taxonomic Hierarchy
- Viruses
root
cellular organisms [inference]
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| FUT11 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| FUT10 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| MGAT3 | UDP-GlcNAc |
G39213VZ
|
Asn-X |
G59471TH
|
Asn-X | |
| MGAT4A | UDP-GlcNAc |
G39213VZ
|
PA |
G29011JC
|
PA | |
| MGAT2 | UDP-GlcNAc |
G61751GZ
|
Asn-Xaa |
G39213VZ
|
Asn-Xaa |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| FUT8 | GDP-Fuc |
G39213VZ
|
Free |
G80858MF
|
Free | |
| FUT11 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| FUT10 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| MGAT3 | UDP-GlcNAc |
G39213VZ
|
Asn-X |
G59471TH
|
Asn-X | |
| MGAT4A | UDP-GlcNAc |
G39213VZ
|
[beta]1-Asn |
G29011JC
|
[beta]1-Asn |
KEGG BRITE Database
G88380UG
G93351GM
G10219AA
GALAXY
Glucose Units
- ODS
- 8.9
- Amide
- 5.1
- Degrading Enzymes
G15403HX
G06063MN
G30817UY
G69912LP
Glycans containing this structure in GALAXY
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| O75015 | Low affinity immunoglobulin gamma Fc region receptor III-B | ||
| P01012 | Ovalbumin | ||
| P01579 | Interferon gamma | ||
| P01857 | Immunoglobulin heavy constant gamma 1 | ||
| P01859 | Immunoglobulin heavy constant gamma 2 | ||
| P01860 | Immunoglobulin heavy constant gamma 3 | ||
| P01861 | Immunoglobulin heavy constant gamma 4 | ||
| P01876 | Immunoglobulin heavy constant alpha 1 | ||
| P01877 | Immunoglobulin heavy constant alpha 2 | ||
| P02710 | Acetylcholine receptor subunit alpha |
Sequence Descriptors
- GlycoCT
-
RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:a-dman-HEX-1:5 10b:b-dglc-HEX-1:5 11s:n-acetyl LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:5o(6+1)9d 9:9o(2+1)10d 10:10d(2+1)11n
- WURCS
- WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1
Literature
| PubMed ID | Title | First Author | Publication Date | Source |
|---|---|---|---|---|
| 34834161 | Glycan Profile Analysis of Engineered Trastuzumab with Rationally Added Glycosylation Sequons Presents Significantly Increased Glycan Complexity | Cruz E | 2021 Oct 20 |
|
| 34207636 | What Can N-glycomics and N-glycoproteomics of Cerebrospinal Fluid Tell Us about Alzheimer Disease? | Gaunitz S | 2021 Jun 9 |
|
| 34106099 | N-Glycosylation in isolated rat nerve terminals | Matthies I | 2021 Aug 1 |
|
| 33139572 | Spatial and temporal diversity of glycome expression in mammalian brain | Lee Jua | 2020-11-17 |
|
| 31889402 | Glycan biomarkers for Alzheimer disease correlate with T-tau and P-tau in cerebrospinal fluid in subjective cognitive impairment | Schedin-Weiss Sophia | 2020-08 |
|
| 32841605 | Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor | Zhao P | 2020 Oct 07 |
|
| 32080177 | Structural basis for substrate specificity and catalysis of α1,6-fucosyltransferase | García-García A | 2020 Feb 20 |
|
| 29671580 | Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein | Sun S | 2018 Apr 19 |
|
| 26595420 | Structure of full-length human anti-PD1 therapeutic IgG4 antibody pembrolizumab | Scapin G | 2015 Nov 23 |
|
| 25345863 | Fc Gamma Receptor Glycosylation Modulates the Binding of IgG Glycoforms: A Requirement for Stable Antibody Interactions | Hayes JM | 2014 Nov 11 |
|
