Submissions
GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
All Resources
Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / OrganismsTools
SugarDrawer
GlycanBuilder
Glycan Converters
GlycoMaple
GlycomeAtlas
LM-GlycomeAtlas
GALAXY
MCAW
GlycoSim
GRable
Guidelines
MIRAGE
G39213VZ
Summary
- GlyTouCan ID
-
G39213VZ
- IUPAC Condensed
- GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-
- Motifs
- N-Glycan complex
- Subsumption Level
- Fully-defined saccharide
- Monoisotopic Mass
- 1316.49
External Links
- GlyConnect structure
- GlyGen
- ChEBI
- PubChem Compound
- PubChem Substance
- CarbBank
3D Structures
G84678BK
G13577LP
Organisms
| Organisms | Evidence |
|---|---|
| Mus musculus (house mouse) | |
| Bos taurus (domestic cattle) | |
| Gallus gallus (chicken) | |
| Rattus norvegicus (Norway rat) | |
| Homo sapiens (human) |
Taxonomic Hierarchy
- Viruses
root
cellular organisms [inference]
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| FUT11 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| FUT10 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| MGAT4A | UDP-GlcNAc |
G39213VZ
|
PA |
G29011JC
|
PA | |
| MGAT3 | UDP-GlcNAc |
G39213VZ
|
Asn-X |
G59471TH
|
Asn-X | |
| MGAT4B | UDP-GlcNAc |
G39213VZ
|
PA |
G29011JC
|
PA |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| FUT11 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| FUT8 | GDP-Fuc |
G39213VZ
|
Free |
G80858MF
|
Free | |
| FUT10 | GDP-Fuc |
G39213VZ
|
R |
G64669AQ
|
R | |
| MGAT4A | UDP-GlcNAc |
G39213VZ
|
PA |
G29011JC
|
PA | |
| MGAT5 | UDP-GlcNAc |
G39213VZ
|
[beta]1-Asn |
G10219AA
|
[beta]1-Asn |
KEGG BRITE Database
G88380UG
G61751GZ
G93351GM
GALAXY
G15403HX
G06063MN
G30817UY
G69912LP
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| O75015 | Low affinity immunoglobulin gamma Fc region receptor III-B | ||
| P01012 | Ovalbumin | ||
| P01579 | Interferon gamma | ||
| P01857 | Immunoglobulin heavy constant gamma 1 | ||
| P01859 | Immunoglobulin heavy constant gamma 2 | ||
| P01860 | Immunoglobulin heavy constant gamma 3 | ||
| P01861 | Immunoglobulin heavy constant gamma 4 | ||
| P01876 | Immunoglobulin heavy constant alpha 1 | ||
| P01877 | Immunoglobulin heavy constant alpha 2 | ||
| P02710 | Acetylcholine receptor subunit alpha |
Sequence Descriptors
- GlycoCT
-
RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:a-dman-HEX-1:5 10b:b-dglc-HEX-1:5 11s:n-acetyl LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:5o(6+1)9d 9:9o(2+1)10d 10:10d(2+1)11n
- WURCS
- WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1
Literature
| PubMed ID | Title | First Author | Publication Date | Source |
|---|---|---|---|---|
| 2363690 | A comparative study of the N-linked oligosaccharide structures of human IgG subclass proteins | Jefferis R | 1990 Jun 15 |
|
| 2138613 | Structural heterogeneity of sugar chains in immunoglobulin G. Conformation of immunoglobulin G molecule and substrate specificities of glycosyltransferases | Fujii S | 1990 Apr 15 |
|
| 3567160 | Comparative structural study of the N-linked oligosaccharides of human normal and pathological immunoglobulin G | Takahashi N | 1987 Feb 01 |
|
| 6192908 | Sugar chain of alpha-fetoprotein produced in human yolk sac tumor | Yamashita K | 1983 Oct |
|
| 6222042 | Control of glycoprotein synthesis. | Gleeson PA | 1983 May 25 |
|
| 7139658 | Preparation and characterisation of fragment glycoasparagines from ovalbumin glycopeptides: Reference compounds for structural and biochemical studies of the oligo-mannose and hybrid types of carbohydrate chains of glycoproteins | Nomoto H | 1982 Sep 01 |
|
| 6216250 | A mouse lymphoma cell line resistant to the leukoagglutinating lectin from Phaseolus vulgaris is deficient in UDP-GlcNAc: alpha-D-mannoside beta 1,6 N-acetylglucosaminyltransferase. | Cummings RD | 1982 Nov 25 |
|
