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Repository for lectin-assisted multimodality data
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Other Information
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Standards Ontologies Notations
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MIRAGE
G80858MF

Summary
GlyTouCan ID
G80858MF
IUPAC Condensed
GlcNAc(b1-2)Man(a1-3)[GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1-
Motifs
N-Glycan complex
Subsumption Level
Fully-defined saccharide
Monoisotopic Mass
1462.54
GlyConnect structure
GlyGen
ChEBI
PubChem Compound
PubChem Substance
CarbBank
3D Structures
GLYCAM
DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH
GlycoShape
G80858MF
Displaying 1 entry
Archetype α β
G89637WE
G95238UV
G80858MF
Organisms
Displaying entries 6 - 7 of 7 in total
Organisms Evidence
Cavia porcellus (domestic guinea pig)
Chlorocebus aethiops (grivet)
Taxonomic Hierarchy
GlycoGene Database (GGDB)
Displaying entries 1 - 5 of 6 in total
Gene Symbol Donor Acceptor Reducing terminal(Acceptor) Product Reducing terminal(Product) Reference
FUT8 GDP-Fuc
G39213VZ
Free
G80858MF
Free
MGAT4B UDP-GlcNAc
G80858MF
PA
G61207RZ
PA
MGAT4A UDP-GlcNAc
G80858MF
PA
G61207RZ
PA
MGAT4A UDP-GlcNAc
G80858MF
Asn-X
G61207RZ
Asn-X
MGAT3 UDP-GlcNAc
G80858MF
Asn-X
G30159WR
Asn-X
KEGG BRITE Database
KEGG ID
Enzyme
References
Reactions
Displaying all 2 entries
KEGG Reaction Enzyme Acceptor Product
R05988
R05989
GALAXY
Glucose Units
ODS
12.3
Amide
5.5
Degrading Enzymes
Displaying entries 1 - 5 of 8 in total
Enzyme Substrate Product
Desulfation
G59357BZ
G80858MF
Desulfation
G65458HJ
G80858MF
Desulfation
G54219FG
G80858MF
α-Fucosidase
G80858MF
G39213VZ
β-Galactosidase
G27919IH
G80858MF
GALAXY: Glycoanalysis by the three axes of MS and chromatography.
Core Protein
Displaying entries 1 - 10 of 39 in total
UniProt ID Protein Name Reference Source
O15389 Sialic acid-binding Ig-like lectin 5
O75015 Low affinity immunoglobulin gamma Fc region receptor III-B
P00451 Coagulation factor VIII
P00747 Plasminogen
P01579 Interferon gamma
P01854 Immunoglobulin heavy constant epsilon
P01857 Immunoglobulin heavy constant gamma 1
P01859 Immunoglobulin heavy constant gamma 2
P01860 Immunoglobulin heavy constant gamma 3
P01861 Immunoglobulin heavy constant gamma 4
Sequence Descriptors
GlycoCT
RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:a-dman-HEX-1:5
10b:b-dglc-HEX-1:5
11s:n-acetyl
12b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:6o(2+1)7d
7:7d(2+1)8n
8:5o(6+1)9d
9:9o(2+1)10d
10:10d(2+1)11n
11:1o(6+1)12d
WURCS
WURCS=2.0/4,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-3-1-4/a4-b1_a6-h1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1
Literature
Displaying entries 41 - 50 of 54 in total
PubMed ID Title First Author Publication Date Source
1639758 A Simple Method for the Release of Asparagine-Linked Oligosaccharides from a Glycoprotein Purified by SDS-Polyacrylamide Gel Electrophoresis Kawashima H 1992 May
  • GlyGen
  • PubChem
1998670 Neutral oligosaccharide structures linked to asparagines of porcine zona pellucida glycoproteins Mori E 1991-02-26
  • GlyGen
1898343 Carbohydrate structure of human pancreatic elastase 1 Wendorf P 1991 Sep 01
  • GlyGen
  • PubChem
1939186 Purification and characterization of GDP-L-fucose-N-acetyl beta-D-glucosaminide alpha 1----6fucosyltransferase from cultured human skin fibroblasts. Requirement of a specific biantennary oligosaccharide as substrate Voynow JA 1991 Nov 15
  • PubChem
1899031 Oligosaccharide structures present on asparagine-289 of recombinant human plasminogen expressed in a Chinese hamster ovary cell line Davidson DJ 1991 Jan 01
  • GlyGen
  • PubChem
2122971 The carbohydrate structures of a mouse monoclonal IgG antibody OKT3 Krotkiewski H 1990 Nov 25
  • GlyGen
2110822 Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver Yamashita K 1990 Mar 01
  • GlyGen
  • PubChem
1694115 Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy Terrana B 1990 Jun
  • GlyGen
  • PubChem
2363690 A comparative study of the N-linked oligosaccharide structures of human IgG subclass proteins Jefferis R 1990 Jun 15
  • GlyGen
  • PubChem
2138613 Structural heterogeneity of sugar chains in immunoglobulin G. Conformation of immunoglobulin G molecule and substrate specificities of glycosyltransferases Fujii S 1990 Apr 15
  • GlyGen
  • PubChem
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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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