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Glycan Structure Repository
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Glycoconjugate Repository
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Glycomics MS raw data Repository
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Glycomics MS Repository for glycan annotations from GlycoWorkbench
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Repository for lectin-assisted multimodality data
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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
Other Information
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Standards Ontologies Notations
Guidelines
MIRAGE
G78059CC

Summary
GlyTouCan ID
G78059CC
IUPAC Condensed
Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)[Fuc(a1-6)]GlcNAc(b1-
Motifs
N-Glycan complex N-acetyllactosamine Type 2 LN
Subsumption Level
Fully-defined saccharide
Monoisotopic Mass
1786.65
GlyConnect structure
GlyGen
ChEBI
PubChem Compound
PubChem Substance
CarbBank
1773 2879 3892 4642 5103 5104 7353 7466 7825 7826 7827 7828 7829 7830 7831 7833 7835 7836 7927 8279 10870 10927 11940 12790 14718 20301 25177 25743 26077 29849 31875 33019 33179 35218 35291 36435 42691 44709 46603 46609 46617 46670
3D Structures
GLYCAM
DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH
GlycoShape
G78059CC
Displaying 1 entry
Archetype α β
G69461KL
G83522FM
G78059CC
Organisms
Displaying entries 1 - 5 of 8 in total
Organisms Evidence
Chlorocebus aethiops (grivet)
Gallus gallus (chicken)
Cricetinae (hamsters)
Mus musculus (house mouse)
Cavia porcellus (domestic guinea pig)
Taxonomic Hierarchy
GlycoGene Database (GGDB)
Displaying 1 entry
Gene Symbol Donor Acceptor Reducing terminal(Acceptor) Product Reducing terminal(Product) Reference
B3GNT2 UDP-GlcNAc
G78059CC
PA
G22865RK
PA
Displaying all 4 entries
Gene Symbol Donor Acceptor Reducing terminal(Acceptor) Reference
MGAT4A UDP-GlcNAc
G78059CC
Asn-X
B3GNT8 UDP-GlcNAc
G78059CC
PA
MGAT3 UDP-GlcNAc
G78059CC
Asn-X
B3GNT7 UDP-GlcNAc
G78059CC
PA
KEGG BRITE Database
KEGG ID
Enzyme
References
Reactions
Displaying all 2 entries
KEGG Reaction Enzyme Acceptor Product
R05990
R05989
GALAXY
Glucose Units
ODS
14.1
Amide
7.4
Degrading Enzymes
Displaying entries 1 - 5 of 25 in total
Enzyme Substrate Product
Desulfation
G23377WN
G78059CC
Desulfation
G03864MI
G78059CC
α-Fucosidase
G78059CC
G36191CD
α-Galactosidase
G26949IX
G78059CC
α-Galactosidase
G70708LW
G78059CC
GALAXY: Glycoanalysis by the three axes of MS and chromatography.
Core Protein
Displaying entries 1 - 10 of 86 in total
UniProt ID Protein Name Reference Source
O75015 Low affinity immunoglobulin gamma Fc region receptor III-B
O97939 Enamelin
P00451 Coagulation factor VIII
P00533 Epidermal growth factor receptor
P00742 Coagulation factor X
P00747 Plasminogen
P00750 Tissue-type plasminogen activator
P00797 Renin
P01009 Alpha-1-antitrypsin
P01215 Glycoprotein hormones alpha chain
Sequence Descriptors
GlycoCT
RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:b-dglc-HEX-1:5
8s:n-acetyl
9b:b-dgal-HEX-1:5
10b:a-dman-HEX-1:5
11b:b-dglc-HEX-1:5
12s:n-acetyl
13b:b-dgal-HEX-1:5
14b:a-lgal-HEX-1:5|6:d
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:6o(2+1)7d
7:7d(2+1)8n
8:7o(4+1)9d
9:5o(6+1)10d
10:10o(2+1)11d
11:11d(2+1)12n
12:11o(4+1)13d
13:1o(6+1)14d
WURCS
WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-5/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1
Literature
Displaying entries 21 - 30 of 122 in total
PubMed ID Title First Author Publication Date Source
14693913 Characterization of N- and O-linked glycosylation of recombinant human bile salt-stimulated lipase secreted by Pichia pastoris Trimble RB 2003 Dec 23
  • GlyGen
  • PubChem
12652077 Structural studies on IgG oligosaccharides of patients with primary Sjogren's syndrome Kuroda Y 2002 Jan
  • GlyGen
  • PubChem
11676606 Determination of Carbohydrate Structures N-Linked to Soluble CD154 and Characterization of the Interactions of CD40 with CD154 Expressed in Pichia pastoris and Chinese Hamster Ovary Cells Khandekar SS 2001 Nov
  • GlyGen
  • PubChem
11278492 Characterization of the glycosylation profiles of Alzheimer's beta -secretase protein Asp-2 expressed in a variety of cell lines Charlwood J 2001 May 18
  • GlyGen
  • PubChem
12151713 N-glycosylation potential of maize: The human lactoferrin used as a model Samyn-Petit B 2001 Jul
  • GlyGen
  • PubChem
11805077 Structural analysis of sulfated N-linked oligosaccharides in erythropoietin Kawasaki N 2001 Dec
  • GlyGen
  • PubChem
11500028 Sialylation of human IgG-Fc carbohydrate by transfected rat alpha2,6-sialyltransferase Jassal R 2001 Aug 17
  • GlyGen
  • PubChem
10988252 Characterization of the carbohydrate chains of the secreted form of the human epidermal growth factor receptor Stroop CJ 2000 Sep
  • GlyGen
  • PubChem
10764840 Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties Cointe D 2000 May
  • GlyGen
  • PubChem
10704524 Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides Ohta M 2000 Mar
  • GlyGen
  • PubChem
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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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